Contents
Attribute Report
Feature Group
59 keys found in group Feature.
BS_essential_Kobayashi
Essentiality of a Bactillus Subtilis gene as determined in the paper by Kobayashi, et al, PMID 12682299, encoded as a rating and a URL.
CDD
Conserved domain data for a PEG. A PEG's domain indicates the shape of a protein's molecular units. A PEG can have one domain or several. If it has several, each one is coded as an individual value. The relevant entry ID in the public Conserved Domain Database is coded as a subkey. The match score is specified as the attribute value (an exact match is 0). The value is represented in scientific notation twice per value, separated by a semi-colon. The value before the semi-colon is designed for sorting; the value after the semi-colon is essentially a standard floating-point representation without the "e" (1-200 instead of 1e-200).
| Object | Key | Values |
|---|---|---|
| fig|8364.3.peg.3501 | CDD::32455 | 901.100;1-1149 |
| fig|103690.1.peg.3906 | CDD::33501 | 901.100;1-169 |
| fig|83334.1.peg.913 | CDD::46206 | 901.100;1-199 |
| fig|155864.1.peg.876 | CDD::32942 | 901.100;1-228 |
| fig|83333.1.peg.491 | CDD::33919 | 901.100;1-228 |
| fig|83334.1.peg.633 | CDD::33919 | 901.100;1-228 |
| fig|155864.1.peg.552 | CDD::33919 | 901.100;1-228 |
| fig|198214.1.peg.427 | CDD::33919 | 901.100;1-228 |
| fig|198215.1.peg.423 | CDD::33919 | 901.100;1-228 |
| fig|216592.1.peg.259 | CDD::33919 | 901.100;1-228 |
| fig|216599.1.peg.660 | CDD::33919 | 901.100;1-228 |
| fig|300269.3.peg.451 | CDD::33919 | 901.100;1-228 |
| fig|316407.3.peg.480 | CDD::33919 | 901.100;1-228 |
| fig|31033.3.peg.3010 | CDD::43090 | 901.100;1-228 |
| fig|220668.1.peg.2586 | CDD::30933 | 901.100;1-230 |
| fig|290434.1.peg.750 | CDD::30933 | 901.100;1-230 |
| fig|160492.1.peg.595 | CDD::32942 | 901.100;1-230 |
| fig|83333.1.peg.67 | CDD::33632 | 901.100;1-231 |
| fig|209261.1.peg.108 | CDD::33632 | 901.100;1-231 |
| fig|220341.1.peg.108 | CDD::33632 | 901.100;1-231 |
| fig|316407.3.peg.66 | CDD::33632 | 901.100;1-231 |
| fig|321314.4.peg.102 | CDD::33632 | 901.100;1-231 |
| fig|31033.3.peg.1131 | CDD::43982 | 901.100;1-231 |
| fig|176299.3.peg.3669 | CDD::31323 | 901.100;1-233 |
| fig|296591.1.peg.3709 | CDD::58227 | 901.100;1-233 |
| fig|101031.3.peg.3112 | CDD::31155 | 901.100;1-234 |
| fig|223283.1.peg.5131 | CDD::58227 | 901.100;1-234 |
| fig|221109.1.peg.2342 | CDD::31155 | 901.100;1-235 |
| fig|306264.1.peg.712 | CDD::31332 | 901.100;1-240 |
| fig|246194.3.peg.947 | CDD::33740 | 901.100;1-241 |
| fig|198214.1.peg.560 | CDD::31729 | 901.100;1-244 |
| fig|486.1.peg.1178 | CDD::31330 | 901.100;1-245 |
| fig|7165.3.peg.10137 | CDD::46413 | 901.100;1-246 |
| fig|31964.1.peg.2159 | CDD::30745 | 901.100;1-249 |
| fig|187420.1.peg.1007 | CDD::32557 | 901.100;1-249 |
| fig|273068.3.peg.1585 | CDD::31729 | 901.100;1-251 |
| fig|295319.3.peg.3971 | CDD::45586 | 901.100;1-252 |
| fig|205918.4.peg.1827 | CDD::30374 | 901.100;1-253 |
| fig|243265.1.peg.459 | CDD::45586 | 901.100;1-253 |
| fig|269797.3.peg.1847 | CDD::32230 | 901.100;1-256 |
| fig|243232.1.peg.1307 | CDD::31983 | 901.100;1-257 |
| fig|159087.4.peg.3793 | CDD::31324 | 901.100;1-258 |
| fig|89187.3.peg.2457 | CDD::33913 | 901.100;1-261 |
| fig|259536.3.peg.1189 | CDD::31298 | 901.100;1-263 |
| fig|259536.4.peg.1189 | CDD::31298 | 901.100;1-263 |
| fig|282459.1.peg.856 | CDD::31320 | 901.100;1-263 |
| fig|282458.1.peg.895 | CDD::31320 | 901.100;1-263 |
| fig|196620.1.peg.874 | CDD::31320 | 901.100;1-263 |
| fig|255470.3.peg.698 | CDD::31320 | 901.100;1-263 |
| fig|220664.3.peg.4937 | CDD::33752 | 901.100;1-267 |
CELLO
Location of a PEG's protein in the cell as predicted by the CELLO tool. The subkey is the location name (e.g. membrane, cytoplasm, extracellular), and the value is the score, a higher score indicating more confidence in the placement.
| Object | Key | Values |
|---|---|---|
| fig|314290.3.peg.3021 | CELLO::cytoplasm | 1.071 |
| fig|196600.1.peg.3003 | CELLO::outer membrane | 1.098 |
| fig|150340.3.peg.961 | CELLO::periplasm | 1.124 |
| fig|345073.3.peg.3235 | CELLO::inner membrane | 1.147 |
| fig|196600.1.peg.4832 | CELLO::inner membrane | 1.152 |
| fig|223926.1.peg.4861 | CELLO::cytoplasm | 1.171 |
| fig|314290.3.peg.2526 | CELLO::periplasm | 1.172 |
| fig|88888881.3.peg.2229 | CELLO::extracellular | 1.184 |
| fig|243277.1.peg.3391 | CELLO::periplasm | 1.199 |
| fig|345072.3.peg.1590 | CELLO::periplasm | 1.199 |
| fig|345072.3.peg.1358 | CELLO::cytoplasm | 1.201 |
| fig|88888881.3.peg.3292 | CELLO::cytoplasm | 1.201 |
| fig|306254.1.peg.1085 | CELLO::periplasm | 1.205 |
| fig|314290.3.peg.1522 | CELLO::periplasm | 1.205 |
| fig|314290.3.peg.2733 | CELLO::cytoplasm | 1.206 |
| fig|216895.1.peg.4394 | CELLO::inner membrane | 1.210 |
| fig|223926.1.peg.188 | CELLO::extracellular | 1.216 |
| fig|243277.1.peg.2591 | CELLO::inner membrane | 1.221 |
| fig|223926.1.peg.1852 | CELLO::outer membrane | 1.221 |
| fig|306254.1.peg.1612 | CELLO::inner membrane | 1.222 |
| fig|88888881.3.peg.1399 | CELLO::cytoplasm | 1.225 |
| fig|314290.3.peg.1780 | CELLO::periplasm | 1.225 |
| fig|360108.3.peg.347 | CELLO::inner membrane | 1.229 |
| fig|216895.1.peg.3893 | CELLO::periplasm | 1.229 |
| fig|306264.1.peg.290 | CELLO::cytoplasm | 1.231 |
| fig|306264.1.peg.71 | CELLO::outer membrane | 1.232 |
| fig|223926.1.peg.3712 | CELLO::outer membrane | 1.235 |
| fig|360111.3.peg.331 | CELLO::outer membrane | 1.240 |
| fig|360108.3.peg.1366 | CELLO::outer membrane | 1.240 |
| fig|195099.3.peg.505 | CELLO::outer membrane | 1.240 |
| fig|216895.1.peg.4092 | CELLO::cytoplasm | 1.241 |
| fig|150340.3.peg.2197 | CELLO::outer membrane | 1.241 |
| fig|345073.3.peg.600 | CELLO::inner membrane | 1.243 |
| fig|314290.3.peg.542 | CELLO::outer membrane | 1.243 |
| fig|360111.3.peg.528 | CELLO::cytoplasm | 1.250 |
| fig|360112.3.peg.457 | CELLO::cytoplasm | 1.250 |
| fig|192222.1.peg.502 | CELLO::cytoplasm | 1.250 |
| fig|354242.3.peg.1348 | CELLO::cytoplasm | 1.250 |
| fig|360110.3.peg.1641 | CELLO::cytoplasm | 1.250 |
| fig|360108.3.peg.1567 | CELLO::cytoplasm | 1.250 |
| fig|195099.3.peg.370 | CELLO::cytoplasm | 1.250 |
| fig|88888881.3.peg.3512 | CELLO::outer membrane | 1.250 |
| fig|88888881.3.peg.1076 | CELLO::outer membrane | 1.252 |
| fig|88888881.3.peg.3461 | CELLO::periplasm | 1.256 |
| fig|216895.1.peg.3604 | CELLO::periplasm | 1.259 |
| fig|195099.3.peg.1316 | CELLO::outer membrane | 1.261 |
| fig|150340.3.peg.3692 | CELLO::inner membrane | 1.262 |
| fig|314290.3.peg.3023 | CELLO::outer membrane | 1.263 |
| fig|243277.1.peg.351 | CELLO::cytoplasm | 1.264 |
| fig|306254.1.peg.948 | CELLO::extracellular | 1.265 |
Comment
General comment about the status of a genome, subsystem, or feature.
| Object | Key | Values |
|---|---|---|
| 63737.1 | Comment | Finished whole genome shotgun. Sequence not closed |
| 59920.3 | Comment | Single contig |
Contact
HTML for contacting the person or organization responsible for a genome, feature, or subsystem, usually encoded as text with a "mailto" hyperlink.
| Object | Key | Values |
|---|---|---|
| 246200.3 | Contact | Moran MA |
| 198804.1 | Contact | Andersson SG |
| 714.2 | Contact | Roe B |
| 267377.1 | Contact | Leigh J |
| 36870.1 | Contact | Aksoy S |
| 283166.1 | Contact | Andersson S |
| 283165.1 | Contact | Andersson S |
| 204722.1 | Contact | Paulsen I |
| 33169.1 | Contact | Philippsen P |
| 38289.1 | Contact | Puehler A |
| 272843.1 | Contact | Kapur V |
| 262316.1 | Contact | Kapur V |
| 264462.1 | Contact | Schuster SC |
| 205913.1 | Contact | O'Sullivan D |
| 209261.1 | Contact | Blattner FR |
| 199310.1 | Contact | Blattner FR |
| 198215.1 | Contact | Blattner FR |
| 187410.1 | Contact | Blattner FR |
| 83333.1 | Contact | Blattner FR |
| 29491.1 | Contact | Reith M |
| 227882.1 | Contact | Omura S |
| 233412.1 | Contact | Munson RS |
| 264201.1 | Contact | Wagner M |
| 243090.1 | Contact | Gloeckner FO |
| 269483.3 | Contact | Tiedje J |
| 198466.1 | Contact | Musser JM |
| 186103.1 | Contact | Musser JM |
| 286636.1 | Contact | Musser JM |
| 257313.1 | Contact | Parkhill J |
| 257311.1 | Contact | Parkhill J |
| 257310.1 | Contact | Parkhill J |
| 257309.1 | Contact | Parkhill J |
| 220341.1 | Contact | Parkhill J |
| 218496.1 | Contact | Parkhill J |
| 216599.1 | Contact | Parkhill J |
| 216598.1 | Contact | Parkhill J |
| 216596.1 | Contact | Parkhill J |
| 216595.1 | Contact | Parkhill J |
| 216594.1 | Contact | Parkhill J |
| 216591.1 | Contact | Parkhill J |
| 214092.1 | Contact | Parkhill J |
| 192222.1 | Contact | Parkhill J |
| 171440.1 | Contact | Parkhill J |
| 1496.1 | Contact | Parkhill J |
| 1336.1 | Contact | Parkhill J |
| 122587.1 | Contact | Parkhill J |
| 97084.1 | Contact | Parkhill J |
| 83555.1 | Contact | Parkhill J |
| 817.1 | Contact | Parkhill J |
| 615.1 | Contact | Parkhill J |
EC_contribute_to_fitness
Essentiality of an Escherichia Coli gene as determined in the paper by Gerdes et al, PMID 13129938, encoded as a rating and a URL.
EC_essential_Blattner
Essentiality of an Escherichia Coli gene as determined by the University of Wisconsin mutagenesis ORF mapping project, encoded as a rating and a URL.
| Object | Key | Values | |
|---|---|---|---|
| fig|83333.1.peg.921 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.920 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.919 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.918 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.917 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.916 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.913 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.912 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.910 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.909 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.906 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.905 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.898 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.894 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.893 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.891 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.890 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.889 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.886 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.885 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.883 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.882 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.881 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.877 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.873 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.870 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.866 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.865 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.863 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.861 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.860 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.858 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.856 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.855 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.854 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.853 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.852 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.851 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.848 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.845 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.844 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.842 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.841 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.836 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.834 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.833 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.832 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.831 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.830 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
| fig|83333.1.peg.82 | EC_essential_Blattner | nonessential | http://www.genome.wisc.edu/functional/tnmutagenesis.htm |
EC_essential_Keio
Essentiality of an Escherichia Coli gene as determined in the paper by Baba et al, PMID 16738554, encoded as a rating and a URL.
EC_essential_Shigen
Essentiality of an Escherichia Coli gene as determined by the PEC database, encoded as a rating and a URL.
| Object | Key | Values | |
|---|---|---|---|
| fig|83333.1.peg.3900 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3899 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3898 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3897 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3896 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3895 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3894 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3893 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3888 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3887 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3885 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3855 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3852 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3785 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3784 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3711 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3710 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3667 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3642 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3640 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3639 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3638 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3637 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3635 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3586 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3584 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3576 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3575 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3573 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3572 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3570 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3569 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3493 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3492 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3397 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3396 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3395 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3319 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3276 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3275 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3274 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3255 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3254 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3253 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3252 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3251 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3250 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3249 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3248 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
| fig|83333.1.peg.3247 | EC_essential_Shigen | essential | http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp |
Essential_Gene_Sets_Bacterial
Indicates the essentiality of a gene according to any one of the papers curated for essentiality purposes, encoded as a keyword (essential, potential_essential, nonessential, undetermined) and the URL of a reference.
| Object | Key | Values | |
|---|---|---|---|
| fig|71421.1.peg.1222 | Essential_Gene_Sets_Bacterial | essential | http://www.pnas.org/cgi/content/abstract/99/2/966?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Akerley&author2=Rubin&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&fdate=3/1/1996&resourcetype=HWCIT |
| fig|71421.1.peg.942 | Essential_Gene_Sets_Bacterial | essential | http://www.pnas.org/cgi/content/abstract/99/2/966?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Akerley&author2=Rubin&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&fdate=3/1/1996&resourcetype=HWCIT |
| fig|158879.1.peg.1 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1017 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1135 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1493 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1079 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1519 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1537 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1218 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1552 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1591 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.16 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1774 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2105 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2093 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2099 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2101 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2118 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2106 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2109 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2114 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2124 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2119 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2120 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2121 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2126 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.362 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.519 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.488 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.509 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.515 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1556 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.520 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.796 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1071 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2104 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1601 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1951 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2035 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.449 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2110 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2115 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.2116 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.724 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.975 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1064 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.976 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1018 | Essential_Gene_Sets_Bacterial | essential | |
| fig|158879.1.peg.1023 | Essential_Gene_Sets_Bacterial | essential |
GO
Gene Ontology information for a feature, encoded as a GO number and descriptive phrase, plus a URL.
HI_contribute_to_fitness_Akerley
Essentiality of a Haemophilius gene as determined in the paper by Akerley, et al, PMID 12682299, encoded as a rating and a URL.
HP_candidate_essential_Salama
Essentiality of a Helicobacter pylori gene as determined in the paper by Salama et al, PMID 15547264, encoded as a rating and a URL.
IPR
Protein domain information from the InterPro database. The subkey contains the ID of a protein domain and the value is a similarity score, encoded as a sortable string followed by the actual score in exponential notation without the "E".
| Object | Key | Values |
|---|---|---|
| fig|345073.3.peg.1989 | IPR::IPR006697 | 0.0;1-1141 |
| fig|314290.3.peg.209 | IPR::IPR006697 | 0.0;1-1150 |
| fig|150340.3.peg.3378 | IPR::IPR006697 | 0.0;1-1154 |
| fig|345073.3.peg.466 | IPR::IPR007780 | 0.0;1-1374 |
| fig|150340.3.peg.1883 | IPR::IPR010758 | 0.0;1-389 |
| fig|314290.3.peg.2836 | IPR::IPR010758 | 0.0;1-389 |
| fig|360108.3.peg.453 | IPR::IPR008439 | 0.0;1-418 |
| fig|360110.3.peg.1137 | IPR::IPR008439 | 0.0;1-424 |
| fig|354242.3.peg.784 | IPR::IPR008439 | 0.0;1-424 |
| fig|192222.1.peg.1184 | IPR::IPR008439 | 0.0;1-424 |
| fig|314290.3.peg.1624 | IPR::IPR012062 | 0.0;1-426 |
| fig|150340.3.peg.3000 | IPR::IPR005582 | 0.0;1-442 |
| fig|345073.3.peg.946 | IPR::IPR005582 | 0.0;1-445 |
| fig|314290.3.peg.2097 | IPR::IPR005582 | 0.0;1-445 |
| fig|88888881.3.peg.2976 | IPR::IPR005582 | 0.0;1-445 |
| fig|196600.1.peg.5189 | IPR::IPR008703 | 0.0;1-446 |
| fig|216895.1.peg.4684 | IPR::IPR008703 | 0.0;1-446 |
| fig|314290.3.peg.227 | IPR::IPR008703 | 0.0;1-446 |
| fig|198466.1.peg.128 | IPR::IPR010900 | 0.0;1-446 |
| fig|160490.1.peg.121 | IPR::IPR010900 | 0.0;1-446 |
| fig|193567.1.peg.130 | IPR::IPR010900 | 0.0;1-446 |
| fig|1314.1.peg.63 | IPR::IPR010900 | 0.0;1-446 |
| fig|286636.1.peg.1964 | IPR::IPR010900 | 0.0;1-446 |
| fig|345073.3.peg.2945 | IPR::IPR010269 | 0.0;1-468 |
| fig|1314.1.peg.1679 | IPR::IPR008571 | 0.0;1-500 |
| fig|314290.3.peg.275 | IPR::IPR004671 | 0.0;1-516 |
| fig|93062.4.peg.2386 | IPR::IPR000193 | 0.0;1-548 |
| fig|359786.3.peg.1401 | IPR::IPR000193 | 0.0;1-548 |
| fig|367830.3.peg.2566 | IPR::IPR000193 | 0.0;1-548 |
| fig|158879.1.peg.2206 | IPR::IPR000193 | 0.0;1-548 |
| fig|196620.1.peg.2252 | IPR::IPR000193 | 0.0;1-548 |
| fig|282459.1.peg.2201 | IPR::IPR000193 | 0.0;1-548 |
| fig|267410.1.peg.3142 | IPR::IPR003206 | 0.0;1-554 |
| fig|267409.1.peg.334 | IPR::IPR003206 | 0.0;1-554 |
| fig|370553.3.peg.986 | IPR::IPR000559 | 0.0;1-556 |
| fig|370551.3.peg.1029 | IPR::IPR000559 | 0.0;1-556 |
| fig|198466.1.peg.853 | IPR::IPR000559 | 0.0;1-556 |
| fig|293653.3.peg.1239 | IPR::IPR000559 | 0.0;1-556 |
| fig|160490.1.peg.928 | IPR::IPR000559 | 0.0;1-556 |
| fig|193567.1.peg.1053 | IPR::IPR000559 | 0.0;1-556 |
| fig|1314.1.peg.1084 | IPR::IPR000559 | 0.0;1-556 |
| fig|286636.1.peg.916 | IPR::IPR000559 | 0.0;1-556 |
| fig|158878.1.peg.72 | IPR::IPR004623 | 0.0;1-556 |
| fig|282458.1.peg.61 | IPR::IPR004623 | 0.0;1-556 |
| fig|359786.3.peg.940 | IPR::IPR004623 | 0.0;1-556 |
| fig|158879.1.peg.70 | IPR::IPR004623 | 0.0;1-556 |
| fig|359786.3.peg.752 | IPR::IPR004623 | 0.0;1-557 |
| fig|367830.3.peg.335 | IPR::IPR004623 | 0.0;1-557 |
| fig|158878.1.peg.2077 | IPR::IPR004623 | 0.0;1-557 |
| fig|158879.1.peg.1947 | IPR::IPR004623 | 0.0;1-557 |
Links
HTML listing of links related to a genome, feature, or subsystem, generally encoded as a list of page names, each hyperlinked to the appropriate page.
MG_essential_Hutchison_2006
Essentiality of a Mycoplasma genitalium gene as determined in the paper by Glass et al, PMID 16407165, encoded as a rating and a URL.
| Object | Key | Values | |
|---|---|---|---|
| fig|243273.1.peg.433 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.432 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.431 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.42 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.425 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.423 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.422 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.421 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.420 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.41 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.419 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.418 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.417 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.416 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.415 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.412 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.411 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.410 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.409 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.408 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.407 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.405 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.404 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.403 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.402 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.400 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.3 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.399 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.398 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.397 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.396 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.394 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.393 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.392 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.391 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.390 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.38 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.389 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.388 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.387 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.386 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.384 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.383 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.381 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.380 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.37 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.379 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.378 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.377 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
| fig|243273.1.peg.376 | MG_essential_Hutchison_2006 | essential | http://www.pnas.org/cgi/content/full/103/2/425 |
MT_contribute_to_fitness_Rubin
Essentiality of a Mycobacterium tuberculosis gene as determined in the paper by Sassetti et al, PMID 12657046, encoded as a rating and a URL.
PA_candidate_essential_Jacobs
Essentiality of a Pseudomonas aeruginosa gene as determined in the paper by Jacobs et al, PMID 14617778, encoded as a rating and a URL.
PA_essential_PA14_PAO1_Liberati
Essentiality of a Pseudomonas aeruginosa gene as determined in the paper by Liberati et al, PMID 16477005, encoded as a rating and a URL.
PDB
Protein Database entry for a given Feature. The subkey is the four-letter PDB identifier, and the value is a sortable similarity score followed by an optional location. In other words, if the PDB value is XXX.XXX;YYY-YYY, then the XXXs are a sortable version of the score that causes lower scores to sort higher, and the YYY-YYY refers to a location on the contig.
| Object | Key | Values |
|---|---|---|
| fig|216599.1.peg.676 | PDB::1ush | 686.800;121-550 |
| fig|216593.1.peg.3116 | PDB::1ush | 686.800;121-550 |
| fig|9031.3.peg.22726 | PDB::1z3i | 686.900;121-644 |
| fig|9598.2.peg.2362 | PDB::1sdd | 686.900;147-647 |
| fig|314291.3.peg.2117 | PDB::1fiy | 687.100;120-879 |
| fig|9615.3.peg.12734 | PDB::1zyz | 687.100;121-763 |
| fig|9606.3.peg.20230 | PDB::2h8h | 687.100;122-452 |
| fig|373384.6.peg.3663 | PDB::1aq2 | 687.100;123-532 |
| fig|7955.3.peg.19979 | PDB::1oz4 | 687.100;146-774 |
| fig|562.2.peg.247 | PDB::1kf6 | 687.200;121-555 |
| fig|615.1.peg.2651 | PDB::1pem | 687.200;121-714 |
| fig|31033.3.peg.29328 | PDB::1lar | 687.200;122-575 |
| fig|344609.3.peg.2321 | PDB::1z7e | 687.200;132-305 |
| fig|12149.1.peg.1762 | PDB::1cy0 | 687.300;122-122 |
| fig|7955.3.peg.19095 | PDB::1w63 | 687.300;138-236 |
| fig|7955.3.peg.8277 | PDB::1wyg | 687.400;1039-1313 |
| fig|8364.3.peg.16873 | PDB::2c6c | 687.400;120-707 |
| fig|615.1.peg.5416 | PDB::2iop | 687.400;141-235 |
| fig|9615.3.peg.16799 | PDB::2fy2 | 687.600;121-612 |
| fig|382638.8.peg.1485 | PDB::1e9z | 687.600;122-570 |
| fig|10116.3.peg.27980 | PDB::1kcw | 687.800;1041-1043 |
| fig|216599.1.peg.346 | PDB::1aq2 | 687.900;123-531 |
| fig|9615.3.peg.14314 | PDB::2h8h | 688.100;122-452 |
| fig|216592.1.peg.623 | PDB::1aq2 | 688.100;123-532 |
| fig|31033.3.peg.16169 | PDB::1zyz | 688.100;123-759 |
| fig|8364.3.peg.16874 | PDB::2c6c | 688.200;120-707 |
| fig|594.1.peg.2345 | PDB::1cy0 | 688.200;122-122 |
| fig|7719.3.peg.16320 | PDB::2dfs | 688.200;124-977 |
| fig|316056.6.peg.1797 | PDB::2d0v | 688.200;128-571 |
| fig|31033.3.peg.30071 | PDB::1w63 | 688.200;138-258 |
| fig|31033.3.peg.30070 | PDB::1w63 | 688.200;138-258 |
| fig|31033.3.peg.30072 | PDB::1w63 | 688.200;138-258 |
| fig|314288.3.peg.3344 | PDB::1fiy | 688.300;120-879 |
| fig|216592.1.peg.671 | PDB::2e0w | 688.300;121-185 |
| fig|9615.3.peg.27559 | PDB::1y1u | 688.300;121-581 |
| fig|8364.3.peg.26981 | PDB::2h94 | 688.300;123-661 |
| fig|357544.8.peg.78 | PDB::1e9z | 688.400;122-570 |
| fig|7719.3.peg.10211 | PDB::1ukl | 688.500;142-487 |
| fig|75985.2.peg.2279 | PDB::1fiy | 688.600;120-880 |
| fig|714.2.peg.761 | PDB::1e3m | 688.700;125-800 |
| fig|216592.1.peg.4729 | PDB::1ush | 689.100;121-550 |
| fig|9606.3.peg.14117 | PDB::2o86 | 689.100;121-592 |
| fig|9615.3.peg.28674 | PDB::1cqe | 689.100;122-554 |
| fig|9598.2.peg.21757 | PDB::1axr | 689.100;220-838 |
| fig|10090.3.peg.1148 | PDB::1ygr | 689.200 |
| fig|714.2.peg.436 | PDB::1qf6 | 689.200;121-224 |
| fig|31033.3.peg.23843 | PDB::1tll | 689.200;121-427 |
| fig|9598.2.peg.2560 | PDB::1pxx | 689.200;121-587 |
| fig|316055.10.peg.2916 | PDB::1h4i | 689.200;128-571 |
| fig|31033.3.peg.4919 | PDB::1tr2 | 689.200;137-266 |
PFAM
Protein family data for a given Feature, taken from the protein family database maintained by the Washington University of St. Louis. The subkey is the protein family ID, and the value is a sortable similarity score followed by the actual similarity score encoded as a floating-point number without the E.
| Object | Key | Values |
|---|---|---|
| fig|345073.3.peg.1989 | PFAM::PF04257 | 0.0;1-1141 |
| fig|314290.3.peg.209 | PFAM::PF04257 | 0.0;1-1150 |
| fig|150340.3.peg.3378 | PFAM::PF04257 | 0.0;1-1154 |
| fig|345073.3.peg.466 | PFAM::PF05088 | 0.0;1-1374 |
| fig|314290.3.peg.2836 | PFAM::PF07055 | 0.0;1-389 |
| fig|150340.3.peg.1883 | PFAM::PF07055 | 0.0;1-389 |
| fig|360108.3.peg.453 | PFAM::PF05538 | 0.0;1-418 |
| fig|354242.3.peg.784 | PFAM::PF05538 | 0.0;1-424 |
| fig|192222.1.peg.1184 | PFAM::PF05538 | 0.0;1-424 |
| fig|360110.3.peg.1137 | PFAM::PF05538 | 0.0;1-424 |
| fig|314290.3.peg.1624 | PFAM::PF08013 | 0.0;1-426 |
| fig|150340.3.peg.3000 | PFAM::PF03882 | 0.0;1-442 |
| fig|314290.3.peg.2097 | PFAM::PF03882 | 0.0;1-445 |
| fig|345073.3.peg.946 | PFAM::PF03882 | 0.0;1-445 |
| fig|88888881.3.peg.2976 | PFAM::PF03882 | 0.0;1-445 |
| fig|314290.3.peg.227 | PFAM::PF05896 | 0.0;1-446 |
| fig|196600.1.peg.5189 | PFAM::PF05896 | 0.0;1-446 |
| fig|216895.1.peg.4684 | PFAM::PF05896 | 0.0;1-446 |
| fig|193567.1.peg.130 | PFAM::PF07461 | 0.0;1-446 |
| fig|160490.1.peg.121 | PFAM::PF07461 | 0.0;1-446 |
| fig|1314.1.peg.63 | PFAM::PF07461 | 0.0;1-446 |
| fig|198466.1.peg.128 | PFAM::PF07461 | 0.0;1-446 |
| fig|286636.1.peg.1964 | PFAM::PF07461 | 0.0;1-446 |
| fig|345073.3.peg.2945 | PFAM::PF05943 | 0.0;1-468 |
| fig|1314.1.peg.1679 | PFAM::PF05872 | 0.0;1-500 |
| fig|314290.3.peg.275 | PFAM::PF06450 | 0.0;1-516 |
| fig|93062.4.peg.2386 | PFAM::PF01175 | 0.0;1-548 |
| fig|367830.3.peg.2566 | PFAM::PF01175 | 0.0;1-548 |
| fig|359786.3.peg.1401 | PFAM::PF01175 | 0.0;1-548 |
| fig|282459.1.peg.2201 | PFAM::PF01175 | 0.0;1-548 |
| fig|196620.1.peg.2252 | PFAM::PF01175 | 0.0;1-548 |
| fig|158879.1.peg.2206 | PFAM::PF01175 | 0.0;1-548 |
| fig|267410.1.peg.3142 | PFAM::PF02286 | 0.0;1-554 |
| fig|267409.1.peg.334 | PFAM::PF02286 | 0.0;1-554 |
| fig|193567.1.peg.1053 | PFAM::PF01268 | 0.0;1-556 |
| fig|160490.1.peg.928 | PFAM::PF01268 | 0.0;1-556 |
| fig|293653.3.peg.1239 | PFAM::PF01268 | 0.0;1-556 |
| fig|1314.1.peg.1084 | PFAM::PF01268 | 0.0;1-556 |
| fig|198466.1.peg.853 | PFAM::PF01268 | 0.0;1-556 |
| fig|370553.3.peg.986 | PFAM::PF01268 | 0.0;1-556 |
| fig|370551.3.peg.1029 | PFAM::PF01268 | 0.0;1-556 |
| fig|286636.1.peg.916 | PFAM::PF01268 | 0.0;1-556 |
| fig|282458.1.peg.61 | PFAM::PF03814 | 0.0;1-556 |
| fig|158878.1.peg.72 | PFAM::PF03814 | 0.0;1-556 |
| fig|359786.3.peg.940 | PFAM::PF03814 | 0.0;1-556 |
| fig|158879.1.peg.70 | PFAM::PF03814 | 0.0;1-556 |
| fig|93062.4.peg.2048 | PFAM::PF03814 | 0.0;1-557 |
| fig|367830.3.peg.335 | PFAM::PF03814 | 0.0;1-557 |
| fig|158878.1.peg.2077 | PFAM::PF03814 | 0.0;1-557 |
| fig|359786.3.peg.752 | PFAM::PF03814 | 0.0;1-557 |
PIRSF
SF classification for a gene in the Protein Information Resource database, encoded as descriptive text and a URL.
| Object | Key | Values | |
|---|---|---|---|
| fig|3702.1.peg.6583 | PIRSF | PIRSF015572 (Full) SCF complex, F-box protein, S-locus SLF type | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF015572 |
| fig|3702.1.peg.6580 | PIRSF | PIRSF027435 (None) Auxin efflux carrier component | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF027435 |
| fig|3702.1.peg.657 | PIRSF | PIRSF031418 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031418 |
| fig|3702.1.peg.6577 | PIRSF | PIRSF031375 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031375 |
| fig|3702.1.peg.6575 | PIRSF | PIRSF005810 (Preliminary) wound-induced protein Sn-1 | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF005810 |
| fig|3702.1.peg.6574 | PIRSF | PIRSF005810 (Preliminary) wound-induced protein Sn-1 | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF005810 |
| fig|3702.1.peg.6570 | PIRSF | PIRSF005810 (Preliminary) wound-induced protein Sn-1 | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF005810 |
| fig|3702.1.peg.6562 | PIRSF | PIRSF031093 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031093 |
| fig|3702.1.peg.6558 | PIRSF | PIRSF000564 (None) kinase-related transforming protein | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF000564 |
| fig|3702.1.peg.6557 | PIRSF | PIRSF001493 (Preliminary) phosphoglucomutase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF001493 |
| fig|3702.1.peg.6556 | PIRSF | PIRSF016452 (None) Ripening-related protein-like, contains similarity to pectinesterase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF016452 |
| fig|3702.1.peg.6555 | PIRSF | PIRSF016437 (None) Arabidopsis membrane-anchored cellulase KOR | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF016437 |
| fig|3702.1.peg.6553 | PIRSF | PIRSF036795 (Preliminary) Putative pollen coat receptor kinase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF036795 |
| fig|3702.1.peg.6552 | PIRSF | PIRSF009361 (Preliminary) rice abscisic acid-induced protein | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF009361 |
| fig|3702.1.peg.6551 | PIRSF | PIRSF009361 (Preliminary) rice abscisic acid-induced protein | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF009361 |
| fig|3702.1.peg.6550 | PIRSF | PIRSF006344 (Preliminary) 1 alpha,25-dihydroxyvitamin D3-inducible protein | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF006344 |
| fig|3702.1.peg.654 | PIRSF | PIRSF000322 (Preliminary) 1-aminocyclopropane-1-carboxylate oxidase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF000322 |
| fig|3702.1.peg.6548 | PIRSF | PIRSF031054 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031054 |
| fig|3702.1.peg.6543 | PIRSF | PIRSF002174 (None) rat ribosomal protein L27a | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF002174 |
| fig|3702.1.peg.6540 | PIRSF | PIRSF000516 (Preliminary) alanine transaminase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF000516 |
| fig|3702.1.peg.653 | PIRSF | PIRSF031062 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031062 |
| fig|3702.1.peg.6538 | PIRSF | PIRSF018366 (None) Alliinase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF018366 |
| fig|3702.1.peg.6537 | PIRSF | PIRSF015633 (Preliminary) Arabidopsis thaliana hypothetical protein F16G20.50 | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF015633 |
| fig|3702.1.peg.6535 | PIRSF | PIRSF031039 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031039 |
| fig|3702.1.peg.6534 | PIRSF | PIRSF036788 (Preliminary) Receptor-like protein kinase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF036788 |
| fig|3702.1.peg.6533 | PIRSF | PIRSF036788 (Preliminary) Receptor-like protein kinase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF036788 |
| fig|3702.1.peg.6526 | PIRSF | PIRSF031438 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031438 |
| fig|3702.1.peg.6523 | PIRSF | PIRSF000564 (None) kinase-related transforming protein | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF000564 |
| fig|3702.1.peg.6520 | PIRSF | PIRSF012927 (None) Arabidopsis thaliana hypothetical protein F17O7.4 | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF012927 |
| fig|3702.1.peg.651 | PIRSF | PIRSF024998 (Preliminary) Floral homeotic protein/Zinc finger protein | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF024998 |
| fig|3702.1.peg.6517 | PIRSF | PIRSF001393 (Preliminary) Escherichia coli carbonate dehydratase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF001393 |
| fig|3702.1.peg.6515 | PIRSF | PIRSF015572 (Full) SCF complex, F-box protein, S-locus SLF type | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF015572 |
| fig|3702.1.peg.6514 | PIRSF | PIRSF015572 (Full) SCF complex, F-box protein, S-locus SLF type | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF015572 |
| fig|3702.1.peg.6513 | PIRSF | PIRSF036781 (Preliminary) Polygalacturonase isoenzyme 1 beta subunit precursor | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF036781 |
| fig|3702.1.peg.6512 | PIRSF | PIRSF008721 (None) Arabidopsis hypothetical protein F17O7.10 | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF008721 |
| fig|3702.1.peg.6510 | PIRSF | PIRSF031058 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031058 |
| fig|3702.1.peg.6509 | PIRSF | PIRSF016379 (Preliminary) Caenorhabditis elegans hypothetical protein ZK809.4 | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF016379 |
| fig|3702.1.peg.6507 | PIRSF | PIRSF000502 (Preliminary) spermidine synthase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF000502 |
| fig|3702.1.peg.6505 | PIRSF | PIRSF015826 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF015826 |
| fig|3702.1.peg.649 | PIRSF | PIRSF001487 (Full) protein disulfide-isomerase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF001487 |
| fig|3702.1.peg.6499 | PIRSF | PIRSF028742 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF028742 |
| fig|3702.1.peg.6498 | PIRSF | PIRSF031140 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031140 |
| fig|3702.1.peg.6488 | PIRSF | PIRSF036780 (Preliminary) Putative receptor-like protein kinase, plant type | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF036780 |
| fig|3702.1.peg.6486 | PIRSF | PIRSF036780 (Preliminary) Putative receptor-like protein kinase, plant type | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF036780 |
| fig|3702.1.peg.6482 | PIRSF | PIRSF016248 (Preliminary) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF016248 |
| fig|3702.1.peg.6472 | PIRSF | PIRSF031372 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF031372 |
| fig|3702.1.peg.6478 | PIRSF | PIRSF026169 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF026169 |
| fig|3702.1.peg.6471 | PIRSF | PIRSF000908 (Full/Desc.) serine/threonine-protein phosphatase | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF000908 |
| fig|3702.1.peg.646 | PIRSF | PIRSF022311 (None) ---- | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF022311 |
| fig|3702.1.peg.6468 | PIRSF | PIRSF005591 (Preliminary) auxin-induced protein | http://pir.georgetown.edu/sfcs-cgi/new/pirclassif.pl?id=SF005591 |
PUBMED
PMID for a paper relating to a gene, encoded as a number and a URL.
PUBMED_CURATED_NOTRELEVANT
Publication on PUBMED that has been determined not to be relevant to a genome or feature, generally encoded as a PUBMED ID and a URL.
| Object | Key | Values | |
|---|---|---|---|
| fig|83333.1.peg.2788 | PUBMED_CURATED_NOTRELEVANT | AndreiO,8300626,Sequence and function of the aas gene in Escherichia coli. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.8300626 |
| fig|83333.1.peg.109 | PUBMED_CURATED_NOTRELEVANT | AndreiO,2607970,Regulationof enterobacterial cephalosporinase production: the role of a membrane-bound sensory transducer. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2607970 |
| fig|83333.1.peg.1289 | PUBMED_CURATED_NOTRELEVANT | masterDanielaB,1840553,Cloningan Escherichia coli gene encoding a protein remarkably similar to mammalian aldehyde dehydrogenases. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1840553 |
| fig|83333.1.peg.1289 | PUBMED_CURATED_NOTRELEVANT | masterDanielaB,7984428,Intrinsicand extrinsic approaches for detecting genes in a bacterial genome. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7984428 |
| fig|83333.1.peg.1289 | PUBMED_CURATED_NOTRELEVANT | masterDanielaB,9150200,TheRIB element in the goaG-pspF intergenic region of Escherichia coli. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9150200 |
| fig|83333.1.peg.4 | PUBMED_CURATED_NOTRELEVANT | RossO,1630901,Systematicsequencing of the Escherichia coli genome: analysis of the 0-2.4 min region. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1630901 |
| fig|83333.1.peg.1723 | PUBMED_CURATED_NOTRELEVANT | AndreiO,2540414,Geneticstructure, function and regulation of the transposable element IS21. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2540414 |
| fig|83333.1.peg.1723 | PUBMED_CURATED_NOTRELEVANT | AndreiO,8431308,Biochemicalgenetics revisited: the use of mutants to study carbon and nitrogen metabolism in the photosynthetic bacteria. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8431308 |
| fig|83333.1.peg.1751 | PUBMED_CURATED_NOTRELEVANT | AndreiO,2670682,Structureand expression in Escherichia coli K-12 of the L-asparaginase I-encoding ansA gene and its flanking regions. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2670682 |
| fig|83333.1.peg.2581 | PUBMED_CURATED_NOTRELEVANT | AndreiO,3025169,Negativemodulation of Escherichia coli NAD kinase by NADPH and NADH. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3025169 |
| fig|83333.1.peg.2581 | PUBMED_CURATED_NOTRELEVANT | AndreiO,3037486,Nucleotidesequence and LexA regulation of the Escherichia coli recN gene. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3037486 |
| fig|83333.1.peg.2581 | PUBMED_CURATED_NOTRELEVANT | AndreiO,3045760,Sequenceanalysis and transcriptional regulation of the Escherichia coli grpE gene, encoding a heat shock protein. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3045760 |
| fig|83333.1.peg.2581 | PUBMED_CURATED_NOTRELEVANT | AndreiO,7984428,Intrinsicand extrinsic approaches for detecting genes in a bacterial genome. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7984428 |
| fig|83333.1.peg.4298 | PUBMED_CURATED_NOTRELEVANT | AndreiO,1327967,Mutationalanalysis of the Escherichia coli serB promoter region reveals transcriptional linkage to a downstream gene. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1327967 |
| fig|83333.1.peg.640 | PUBMED_CURATED_NOTRELEVANT | AndreiO,10894752,Identificationof the Escherichia coli nicotinic acid mononucleotide adenylyltransferase gene. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10894752 |
| fig|83333.1.peg.4298 | PUBMED_CURATED_NOTRELEVANT | AndreiO,16751270,Testsof parallel molecular evolution in a long-term experiment with Escherichia coli. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16751270 |
| fig|83333.1.peg.109 | PUBMED_CURATED_NOTRELEVANT | AndreiO,2691840,Signallingproteins in enterobacterial AmpC beta-lactamase regulation. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2691840 |
| fig|83333.1.peg.109 | PUBMED_CURATED_NOTRELEVANT | AndreiO,7934814,Commoncomponents in the assembly of type 4 fimbriae, DNA transfer systems, filamentous phage and protein-secretion apparatus: a general system for the formation of surface-associated protein complexes. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7934814 |
| fig|83333.1.peg.109 | PUBMED_CURATED_NOTRELEVANT | AndreiO,7959070,Escherichiacoli contains a set of genes homologous to those involved in protein secretion, DNA uptake and the assembly of type-4 fimbriae in other bacteria. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7959070 |
PUBMED_CURATED_RELEVANT
Publication on PUBMED that has been determined to be relevant to a genome or feature, generally encoded as a PUBMED ID and a URL.
| Object | Key | Values | |
|---|---|---|---|
| fig|83333.1.peg.2788 | PUBMED_CURATED_RELEVANT | AndreiO,15661733,Lysophospholipid flipping across the Escherichia coli inner membrane catalyzed by a transporter (LplT) belonging to the major facilitator superfamily. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15661733 |
| fig|187420.1.peg.896 | PUBMED_CURATED_RELEVANT | gjo,2668276,Purification and properties of Methanobacterium thermoautotrophicum DNA photolyase. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2668276 |
| fig|300852.3.peg.1847 | PUBMED_CURATED_RELEVANT | VeronikaV,1539996,Molecular cloning of the isocitrate dehydrogenase gene of an extreme thermophile, Thermus thermophilus HB8. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.1539996 |
| fig|262724.1.peg.1166 | PUBMED_CURATED_RELEVANT | VeronikaV,12427751,Characterization of homoisocitrate dehydrogenase involved in lysine biosynthesis of an extremely thermophilic bacterium, Thermus thermophilus HB27, and evolutionary implication of beta-decarboxylating dehydrogenase. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.12427751 |
| fig|99287.1.peg.1761 | PUBMED_CURATED_RELEVANT | gjo,16617437,Structural characterization of Salmonella typhimurium YeaZ, an M22 O-sialoglycoprotein endopeptidase homolog. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.16617437 |
| fig|83333.1.peg.1790 | PUBMED_CURATED_RELEVANT | gjo,16617437,Structural characterization of Salmonella typhimurium YeaZ, an M22 O-sialoglycoprotein endopeptidase homolog. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16617437 |
| fig|224308.1.peg.594 | PUBMED_CURATED_RELEVANT | gjo,9743119,A genome-based approach for the identification of essential bacterial genes. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9743119 |
| fig|224308.1.peg.594 | PUBMED_CURATED_RELEVANT | gjo,15044829,A global approach to identify novel broad-spectrum antibacterial targets among proteins of unknown function. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15044829 |
| fig|83333.1.peg.3012 | PUBMED_CURATED_RELEVANT | master:gjo,9743119,A genome-based approach for the identification of essential bacterial genes. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9743119 |
| fig|84588.1.peg.1907 | PUBMED_CURATED_RELEVANT | master:gjo,17019606,Identification of glycine betaine as compatible solute in Synechococcus sp. WH8102 and characterization of its N-methyltransferase genes involved in betaine synthesis. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17019606 |
| fig|84588.1.peg.1906 | PUBMED_CURATED_RELEVANT | master:gjo,17019606,Identification of glycine betaine as compatible solute in Synechococcus sp. WH8102 and characterization of its N-methyltransferase genes involved in betaine synthesis. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17019606 |
| fig|83333.1.peg.436 | PUBMED_CURATED_RELEVANT | VeronikaV,3042779,Sequence of the lon gene in Escherichia coli. A heat-shock gene which encodes the ATP-dependent protease La. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.3042779 |
| fig|224308.1.peg.2824 | PUBMED_CURATED_RELEVANT | VeronikaV,7961403,Bacillus subtilis lon protease prevents inappropriate transcription of genes under the control of the sporulation transcription factor sigma G. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.7961403 |
| fig|190650.1.peg.1947 | PUBMED_CURATED_RELEVANT | VeronikaV,8666236,Caulobacter Lon protease has a critical role in cell-cycle control of DNA methylation. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.8666236 |
| fig|265669.1.peg.1555 | PUBMED_CURATED_RELEVANT | OlgaZ,16911044,The protein secretion systems in Listeria: inside out bacterial virulence. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16911044 |
| fig|262724.1.peg.418 | PUBMED_CURATED_RELEVANT | VeronikaV,10583374,Molecular cloning of the Lon protease gene from Thermus thermophilus HB8 and characterization of its gene product. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.10583374 |
| fig|69014.3.peg.840 | PUBMED_CURATED_RELEVANT | VeronikaV,12057965,A membrane-bound archaeal Lon protease displays ATP-independent proteolytic activity towards unfolded proteins and ATP-dependent activity for folded proteins. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.12057965 |
| fig|300852.3.peg.800 | PUBMED_CURATED_RELEVANT | VeronikaV,10583374,Molecular cloning of the Lon protease gene from Thermus thermophilus HB8 and characterization of its gene product. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.10583374 |
| fig|243232.1.peg.1457 | PUBMED_CURATED_RELEVANT | VeronikaV,15456757,The active site of a lon protease from Methanococcus jannaschii distinctly differs from the canonical catalytic Dyad of Lon proteases. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.15456757 |
| fig|83333.1.peg.109 | PUBMED_CURATED_RELEVANT | AndreiO,8561507,Thesequencing expression, purification, and steady-state kinetic analysis of quinolinate phosphoribosyl transferase from Escherichia coli. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8561507 |
| fig|83333.1.peg.109 | PUBMED_CURATED_RELEVANT | AndreiO,8419294,TheSalmonella typhimurium nadC gene: sequence determination by use of Mud-P22 and purification of quinolinate phosphoribosyltransferase. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8419294 |
| fig|9606.3.peg.6551 | PUBMED_CURATED_RELEVANT | ChenY,11286508,Identificationof the alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase gene, the human ortholog of the yeast LYS5 gene. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11286508 |
| fig|9606.3.peg.6551 | PUBMED_CURATED_RELEVANT | ChenY,12815048,Cloning,expression, and characterization of a human 4'-phosphopantetheinyl transferase with broad substrate specificity. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12815048 |
| fig|83333.1.peg.2545 | PUBMED_CURATED_RELEVANT | masterAndreiO,2187483,Expressionof the E. coli nadB gene and characterization of the gene product L-aspartate oxidase. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2187483 |
| fig|83333.1.peg.2545 | PUBMED_CURATED_RELEVANT | masterAndreiO,10425677,Structureof L-aspartate oxidase: implications for the succinate dehydrogenase/fumarate reductase oxidoreductase family. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10425677 |
| fig|83333.1.peg.2545 | PUBMED_CURATED_RELEVANT | masterAndreiO,2841129,Molecularbiology of pyridine nucleotide biosynthesis in Escherichia coli. Cloning and characterization of quinolinate synthesis genes nadA and nadB. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2841129 |
| fig|83333.1.peg.1289 | PUBMED_CURATED_RELEVANT | masterDanielaB,15590624,Anovel putrescine utilization pathway involves gamma-glutamylated intermediates of Escherichia coli K-12. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15590624 |
| fig|210007.1.peg.238 | PUBMED_CURATED_RELEVANT | masterSvetaG,14996823,Analysisof an agmatine deiminase gene cluster in Streptococcus mutans UA159. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14996823 |
| fig|3702.1.peg.22961 | PUBMED_CURATED_RELEVANT | masterSvetaG,12782327,Identificationand characterization of plant agmatine iminohydrolase, the last missing link in polyamine biosynthesis of plants. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12782327 |
| fig|3702.1.peg.22961 | PUBMED_CURATED_RELEVANT | masterSvetaG,12914918,Thediverse bacterial origins of the Arabidopsis polyamine biosynthetic pathway. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12914918 |
| fig|83333.1.peg.4027 | PUBMED_CURATED_RELEVANT | masterSvetaG,12867448,YjdE(AdiC) is the arginine:agmatine antiporter essential for arginine-dependent acid resistance in Escherichia coli. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12867448 |
| fig|83333.1.peg.4027 | PUBMED_CURATED_RELEVANT | masterSvetaG,14594828,Arginine-agmatineantiporter in extreme acid resistance in Escherichia coli. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14594828 |
| fig|264203.3.peg.1006 | PUBMED_CURATED_RELEVANT | masterVeronikaV,9515924,Purificationof the pyruvate dehydrogenase multienzyme complex of Zymomonas mobilis and identification and sequence analysis of the corresponding genes. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9515924 |
| fig|264203.3.peg.1008 | PUBMED_CURATED_RELEVANT | masterVeronikaV,9515924,Purificationof the pyruvate dehydrogenase multienzyme complex of Zymomonas mobilis and identification and sequence analysis of the corresponding genes. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9515924 |
| fig|264203.3.peg.79 | PUBMED_CURATED_RELEVANT | masterVeronikaV,9515924,Purificationof the pyruvate dehydrogenase multienzyme complex of Zymomonas mobilis and identification and sequence analysis of the corresponding genes. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9515924 |
| fig|264203.3.peg.80 | PUBMED_CURATED_RELEVANT | masterVeronikaV,9515924,Purificationof the pyruvate dehydrogenase multienzyme complex of Zymomonas mobilis and identification and sequence analysis of the corresponding genes. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9515924 |
| fig|243274.1.peg.173 | PUBMED_CURATED_RELEVANT | VeronikaV,11343697,A thermostable K(+)-stimulated vacuolar-type pyrophosphatase from the hyperthermophilic bacterium Thermotoga maritima. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.11343697 |
| fig|243274.1.peg.173 | PUBMED_CURATED_RELEVANT | VeronikaV,15697234,Membrane-bound pyrophosphatase of Thermotoga maritima requires sodium for activity. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.15697234 |
| fig|3702.1.peg.21416 | PUBMED_CURATED_RELEVANT | AndreiO,16361515,An LL-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=.16361515 |
| fig|83333.1.peg.1723 | PUBMED_CURATED_RELEVANT | AndreiO,8195100,TheEscherichia coli efg gene and the Rhodobacter capsulatus adgA gene code for NH3-dependent NAD synthetase. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8195100 |
| fig|83333.1.peg.1723 | PUBMED_CURATED_RELEVANT | AndreiO,1512214,Anessential gene (efg) located at 38.1 minutes on the Escherichia coli chromosome. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1512214 |
| fig|83333.1.peg.1751 | PUBMED_CURATED_RELEVANT | AndreiO,8726014,Identification,cloning, and expression of the Escherichia coli pyrazinamidase and nicotinamidase gene, pncA. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8726014 |
| fig|83333.1.peg.640 | PUBMED_CURATED_RELEVANT | AndreiO,10493123,Enrichmentof low abundance proteins of Escherichia coli by hydroxyapatite chromatography. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10493123 |
| fig|83333.1.peg.2581 | PUBMED_CURATED_RELEVANT | AndreiO,11488932,Molecularcharacterization of Escherichia coli NAD kinase. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11488932 |
| fig|83333.1.peg.640 | PUBMED_CURATED_RELEVANT | AndreiO,11796112,Crystalstructures of E. coli nicotinate mononucleotide adenylyltransferase and its complex with deamido-NAD. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11796112 |
| fig|83333.1.peg.736 | PUBMED_CURATED_RELEVANT | AndreiO,2841129,Molecularbiology of pyridine nucleotide biosynthesis in Escherichia coli. Cloning and characterization of quinolinate synthesis genes nadA and nadB. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2841129 |
| fig|83333.1.peg.737 | PUBMED_CURATED_RELEVANT | AndreiO,1991724,Activityof the nicotinamide mononucleotide transport system is regulated in Salmonella typhimurium. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1991724 |
| fig|83333.1.peg.736 | PUBMED_CURATED_RELEVANT | AndreiO,15967443,Quinolinatesynthetase, an iron-sulfur enzyme in NAD biosynthesis. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15967443 |
| fig|83333.1.peg.916 | PUBMED_CURATED_RELEVANT | AndreiO,2211655,Variationof cofactor levels in Escherichia coli. Sequence analysis and expression of the pncB gene encoding nicotinic acid phosphoribosyltransferase. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2211655 |
| fig|272561.1.peg.398 | PUBMED_CURATED_RELEVANT | AndreiO,17093042,L,L-diaminopimelate aminotransferase, a trans-kingdom enzyme shared by Chlamydia and plants for synthesis of diaminopimelate/lysine. | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17093042 |
Publication
Publication reference for a genome, subsystem, or feature, encoded as a description and a URL.
Publication_
Indication that a genome, subsystem, or feature is unpublished, but publication is in progress.
| Object | Key | Values |
|---|---|---|
| 316279.3 | Publication_ | unpublished |
| 269084.3 | Publication_ | unpublished |
| 1140.3 | Publication_ | unpublished |
| 110662.3 | Publication_ | unpublished |
| 74546.3 | Publication_ | unpublished |
| 63737.1 | Publication_ | unpublished |
| 59920.3 | Publication_ | unpublished |
SA_essential_Forsyth
Essentiality of a Staphlococcus Aureus gene, as determined in the paper by Forsyth et al, PMID 11952893, encoded as a rating and a URL.
SA_essential_Ji
Essentiality of a Staphlococcus Aureus gene, as determined in the paper by Ji et al, PMID 11567142, encoded as a rating and a URL.
SA_essential_merged_Forsyth_and_Ji
Essentiality of a Staphlococcus Aureus gene, as determined in the paper by Ji et al, PMID 11567142, and Forsyth et al, PMID 11952893, encoded as a rating only.
| Object | Key | Values |
|---|---|---|
| fig|158879.1.peg.520 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.519 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.518 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.517 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.515 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.514 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.512 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.509 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.501 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.499 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.496 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.488 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.480 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.477 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.475 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.474 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.462 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.461 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.460 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.450 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.449 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.448 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.440 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.425 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.362 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.360 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.358 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.313 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.279 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2658 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2593 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2590 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2580 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2529 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2521 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2421 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2379 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2365 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2353 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2345 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2338 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2226 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2221 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2183 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2126 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2124 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2123 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2121 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2120 | SA_essential_merged_Forsyth_and_Ji | essential |
| fig|158879.1.peg.2119 | SA_essential_merged_Forsyth_and_Ji | essential |
SP_essential_Song
Essentiality of a Streptococcus Pneumoniae, as determined in the paper by Song et al, PMID 15995353, encoded as a rating and a URL.
SP_essential_Thanassi
Essentiality of a Streptococcus Pneumoniae gene, as determined in the paper by Thanassi et al, PMID 12136097, encoded as a rating and a URL.
SP_essential_merged
Essentiality of a Streptococcus Pneumoniae gene, as determined in any of the papers used, encoded as a rating only.
| Object | Key | Values |
|---|---|---|
| fig|171101.1.peg.687 | SP_essential_merged | essential |
| fig|171101.1.peg.671 | SP_essential_merged | essential |
| fig|171101.1.peg.670 | SP_essential_merged | essential |
| fig|171101.1.peg.666 | SP_essential_merged | essential |
| fig|171101.1.peg.646 | SP_essential_merged | essential |
| fig|171101.1.peg.626 | SP_essential_merged | essential |
| fig|171101.1.peg.604 | SP_essential_merged | essential |
| fig|171101.1.peg.603 | SP_essential_merged | essential |
| fig|171101.1.peg.5 | SP_essential_merged | essential |
| fig|171101.1.peg.591 | SP_essential_merged | essential |
| fig|171101.1.peg.589 | SP_essential_merged | essential |
| fig|171101.1.peg.585 | SP_essential_merged | essential |
| fig|171101.1.peg.538 | SP_essential_merged | essential |
| fig|171101.1.peg.530 | SP_essential_merged | essential |
| fig|171101.1.peg.509 | SP_essential_merged | essential |
| fig|171101.1.peg.49 | SP_essential_merged | essential |
| fig|171101.1.peg.47 | SP_essential_merged | essential |
| fig|171101.1.peg.478 | SP_essential_merged | essential |
| fig|171101.1.peg.413 | SP_essential_merged | essential |
| fig|171101.1.peg.3 | SP_essential_merged | essential |
| fig|171101.1.peg.395 | SP_essential_merged | essential |
| fig|171101.1.peg.393 | SP_essential_merged | essential |
| fig|171101.1.peg.387 | SP_essential_merged | essential |
| fig|171101.1.peg.364 | SP_essential_merged | essential |
| fig|171101.1.peg.359 | SP_essential_merged | essential |
| fig|171101.1.peg.356 | SP_essential_merged | essential |
| fig|171101.1.peg.338 | SP_essential_merged | essential |
| fig|171101.1.peg.328 | SP_essential_merged | essential |
| fig|171101.1.peg.304 | SP_essential_merged | essential |
| fig|171101.1.peg.269 | SP_essential_merged | essential |
| fig|171101.1.peg.268 | SP_essential_merged | essential |
| fig|171101.1.peg.267 | SP_essential_merged | essential |
| fig|171101.1.peg.266 | SP_essential_merged | essential |
| fig|171101.1.peg.243 | SP_essential_merged | essential |
| fig|171101.1.peg.238 | SP_essential_merged | essential |
| fig|171101.1.peg.2298 | SP_essential_merged | essential |
| fig|171101.1.peg.2292 | SP_essential_merged | essential |
| fig|171101.1.peg.2289 | SP_essential_merged | essential |
| fig|171101.1.peg.2286 | SP_essential_merged | essential |
| fig|171101.1.peg.2279 | SP_essential_merged | essential |
| fig|171101.1.peg.2266 | SP_essential_merged | essential |
| fig|171101.1.peg.2255 | SP_essential_merged | essential |
| fig|171101.1.peg.2248 | SP_essential_merged | essential |
| fig|171101.1.peg.2226 | SP_essential_merged | essential |
| fig|171101.1.peg.2208 | SP_essential_merged | essential |
| fig|171101.1.peg.2197 | SP_essential_merged | essential |
| fig|171101.1.peg.2196 | SP_essential_merged | essential |
| fig|171101.1.peg.2172 | SP_essential_merged | essential |
| fig|171101.1.peg.2171 | SP_essential_merged | essential |
| fig|171101.1.peg.2146 | SP_essential_merged | essential |
ST_essential_Knuth
Essentiality of a Salmonella Typhimurium gene, as determined in the paper by Knuth et al, PMID 15009898, encoded as a rating and a URL.
SignalP
Signal Peptide capability of a given Feature. The subkey is either "signal_peptide" or "cleavage_site". The value is a probability followed by the location of the peptide or cleavage site. The location is always between two nucleotides. Existence of a signal peptide means the protein will move toward the cell membrane. Existence of a cleavage site means that once the protein reaches the membrane, part of it will be cleaved off and get excreted to the environment. A feature must have both if it needs to be expelled from the cell.
| Object | Key | Values |
|---|---|---|
| fig|196600.1.peg.3966 | SignalP::signal_peptide | 0.500 |
| fig|223926.1.peg.4729 | SignalP::signal_peptide | 0.500 |
| fig|88888881.3.peg.1823 | SignalP::signal_peptide | 0.500 |
| fig|158879.1.peg.2544 | SignalP::signal_peptide | 0.501 |
| fig|345073.3.peg.1787 | SignalP::signal_peptide | 0.501 |
| fig|196600.1.peg.4215 | SignalP::signal_peptide | 0.501 |
| fig|282458.1.peg.2620 | SignalP::signal_peptide | 0.501 |
| fig|243277.1.peg.4143 | SignalP::signal_peptide | 0.501 |
| fig|158878.1.peg.2664 | SignalP::signal_peptide | 0.501 |
| fig|359786.3.peg.1920 | SignalP::signal_peptide | 0.501 |
| fig|345072.3.peg.2807 | SignalP::signal_peptide | 0.501 |
| fig|88888881.3.peg.2304 | SignalP::signal_peptide | 0.501 |
| fig|158879.1.peg.2279 | SignalP::signal_peptide | 0.502 |
| fig|158879.1.peg.2565 | SignalP::signal_peptide | 0.502 |
| fig|196620.1.peg.2604 | SignalP::signal_peptide | 0.502 |
| fig|196620.1.peg.2328 | SignalP::signal_peptide | 0.502 |
| fig|273036.3.peg.2485 | SignalP::signal_peptide | 0.502 |
| fig|273036.3.peg.2224 | SignalP::signal_peptide | 0.502 |
| fig|306264.1.peg.1461 | SignalP::signal_peptide | 0.502 |
| fig|282458.1.peg.2363 | SignalP::signal_peptide | 0.502 |
| fig|367830.3.peg.2400 | SignalP::signal_peptide | 0.502 |
| fig|223926.1.peg.1255 | SignalP::signal_peptide | 0.502 |
| fig|223926.1.peg.4292 | SignalP::signal_peptide | 0.502 |
| fig|158878.1.peg.2406 | SignalP::signal_peptide | 0.502 |
| fig|158878.1.peg.2685 | SignalP::signal_peptide | 0.502 |
| fig|359786.3.peg.1847 | SignalP::signal_peptide | 0.502 |
| fig|359786.3.peg.1522 | SignalP::signal_peptide | 0.502 |
| fig|282459.1.peg.2550 | SignalP::signal_peptide | 0.502 |
| fig|314290.3.peg.4292 | SignalP::signal_peptide | 0.502 |
| fig|93062.4.peg.2244 | SignalP::signal_peptide | 0.502 |
| fig|286636.1.peg.1702 | SignalP::signal_peptide | 0.502 |
| fig|370554.3.peg.1788 | SignalP::signal_peptide | 0.502 |
| fig|267409.1.peg.350 | SignalP::signal_peptide | 0.503 |
| fig|265669.1.peg.698 | SignalP::signal_peptide | 0.503 |
| fig|170187.1.peg.1491 | SignalP::signal_peptide | 0.503 |
| fig|171101.1.peg.1452 | SignalP::signal_peptide | 0.503 |
| fig|370554.3.peg.117 | SignalP::signal_peptide | 0.503 |
| fig|88888881.3.peg.3120 | SignalP::signal_peptide | 0.503 |
| fig|169963.1.peg.202 | SignalP::signal_peptide | 0.504 |
| fig|196600.1.peg.3816 | SignalP::signal_peptide | 0.504 |
| fig|196600.1.peg.5432 | SignalP::signal_peptide | 0.504 |
| fig|196600.1.peg.3322 | SignalP::signal_peptide | 0.504 |
| fig|171101.1.peg.1992 | SignalP::signal_peptide | 0.504 |
| fig|223926.1.peg.3458 | SignalP::signal_peptide | 0.504 |
| fig|314290.3.peg.197 | SignalP::signal_peptide | 0.504 |
| fig|360108.3.peg.618 | SignalP::signal_peptide | 0.504 |
| fig|195099.3.peg.324 | SignalP::signal_peptide | 0.504 |
| fig|223926.1.peg.53 | SignalP::signal_peptide | 0.505 |
| fig|314290.3.peg.4278 | SignalP::signal_peptide | 0.505 |
| fig|272626.1.peg.128 | SignalP::signal_peptide | 0.506 |
TMPRED
Estimation of membrane-spanning regions in a given feature as computed by the TMPredict utility. The value is a number followed by a list of locations inside the feature.
| Object | Key | Values |
|---|---|---|
| fig|223926.1.peg.478 | TMPRED | 10001;12-29,60-79,160-178,205-231,299-317 |
| fig|345073.3.peg.2337 | TMPRED | 10002;1-19,41-66,72-90,133-151,160-181,194-211 |
| fig|243277.1.peg.189 | TMPRED | 10002;1-19,41-66,72-90,133-151,160-181,194-211 |
| fig|345072.3.peg.2210 | TMPRED | 10002;1-19,41-66,72-90,133-151,160-181,194-211 |
| fig|282458.1.peg.2297 | TMPRED | 10002;40-63,67-85,110-129,150-166 |
| fig|282458.1.peg.287 | TMPRED | 10003;15-36,235-255,277-299,317-337 |
| fig|150340.3.peg.86 | TMPRED | 10003;20-38,114-138,156-175,184-205,241-263,283-301 |
| fig|223926.1.peg.4979 | TMPRED | 10003;20-38,114-138,156-175,184-205,241-263,283-301 |
| fig|243277.1.peg.3652 | TMPRED | 10004;19-41,50-66,74-94,109-128,171-191,207-223 |
| fig|88888881.3.peg.115 | TMPRED | 10004;34-56,63-81,98-119,126-154,205-230 |
| fig|282458.1.peg.1060 | TMPRED | 10006;1-20,32-53,64-86,102-120,144-160 |
| fig|306263.1.peg.843 | TMPRED | 10007;26-45,63-88,86-110,154-172,193-216 |
| fig|360108.3.peg.24 | TMPRED | 10008;6-25,33-54,107-125,137-158 |
| fig|345073.3.peg.134 | TMPRED | 1000;1-25 |
| fig|243277.1.peg.1210 | TMPRED | 1000;1-25 |
| fig|345072.3.peg.1235 | TMPRED | 1000;1-25 |
| fig|88888881.3.peg.695 | TMPRED | 1000;1-25 |
| fig|158879.1.peg.709 | TMPRED | 1000;117-140 |
| fig|196620.1.peg.700 | TMPRED | 1000;117-140 |
| fig|273036.3.peg.769 | TMPRED | 1000;117-140 |
| fig|282458.1.peg.738 | TMPRED | 1000;117-140 |
| fig|367830.3.peg.1688 | TMPRED | 1000;117-140 |
| fig|158878.1.peg.738 | TMPRED | 1000;117-140 |
| fig|359786.3.peg.2401 | TMPRED | 1000;117-140 |
| fig|282459.1.peg.698 | TMPRED | 1000;117-140 |
| fig|243277.1.peg.1315 | TMPRED | 1000;15-33 |
| fig|150340.3.peg.1780 | TMPRED | 1000;159-178 |
| fig|314290.3.peg.1004 | TMPRED | 1000;192-214 |
| fig|158879.1.peg.867 | TMPRED | 1000;338-358 |
| fig|196620.1.peg.866 | TMPRED | 1000;338-358 |
| fig|282458.1.peg.888 | TMPRED | 1000;338-358 |
| fig|158878.1.peg.984 | TMPRED | 1000;338-358 |
| fig|359786.3.peg.81 | TMPRED | 1000;338-358 |
| fig|282459.1.peg.848 | TMPRED | 1000;338-358 |
| fig|93062.4.peg.1139 | TMPRED | 1000;338-358 |
| fig|267409.1.peg.884 | TMPRED | 1000;350-368 |
| fig|265669.1.peg.2721 | TMPRED | 1000;350-368 |
| fig|169963.1.peg.2747 | TMPRED | 1000;350-368 |
| fig|272626.1.peg.2881 | TMPRED | 1000;350-368 |
| fig|267410.1.peg.1290 | TMPRED | 1000;350-368 |
| fig|314290.3.peg.3302 | TMPRED | 1000;41-60 |
| fig|216895.1.peg.4647 | TMPRED | 1000;439-466 |
| fig|196600.1.peg.3700 | TMPRED | 1000;439-466 |
| fig|158879.1.peg.2069 | TMPRED | 1000;53-75 |
| fig|196620.1.peg.2120 | TMPRED | 1000;53-75 |
| fig|273036.3.peg.2030 | TMPRED | 1000;53-75 |
| fig|282458.1.peg.2155 | TMPRED | 1000;53-75 |
| fig|367830.3.peg.1225 | TMPRED | 1000;53-75 |
| fig|158878.1.peg.2194 | TMPRED | 1000;53-75 |
| fig|359786.3.peg.1449 | TMPRED | 1000;53-75 |
cell_surface
Indication that a feature creates a cell surface protein, generally encoded as a role abbreviation and a reference (URL or citation).
| Object | Key | Values | |
|---|---|---|---|
| fig|158879.1.peg.758 | cell_surface | Clumping factor | http://www.rockefeller.edu/vaf/surfall99.htm |
| fig|158879.1.peg.758 | cell_surface | Clumping factor | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8170386&query_hl=105 |
| fig|158879.1.peg.588 | cell_surface | SARA | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.588 | cell_surface | SARA | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.533 | cell_surface | SDRC | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.533 | cell_surface | SDRC | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.519 | cell_surface | FUS | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.519 | cell_surface | FUS | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.482 | cell_surface | FTSH | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.482 | cell_surface | FTSH | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.469 | cell_surface | SPOVG | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.469 | cell_surface | SPOVG | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.40 | cell_surface | mecA | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15451502&query_hl=1 |
| fig|158879.1.peg.40 | cell_surface | mecA | Current Opinion in Microbiology, Volume 7, Issue 5, Pages 477-487 |
| fig|158879.1.peg.382 | cell_surface | SAV0387 | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.382 | cell_surface | SAV0387 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.2573 | cell_surface | SAV2693 | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.2573 | cell_surface | SAV2693 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.2548 | cell_surface | ICAB | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.2548 | cell_surface | ICAB | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.2517 | cell_surface | AUR | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.2517 | cell_surface | AUR | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.2510 | cell_surface | ClfB | Current Opinion in Microbiology, Volume 7, Issue 5, Pages 477-487 |
| fig|158879.1.peg.2510 | cell_surface | ClfB | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15451502&query_hl=1 |
| fig|158879.1.peg.2401 | cell_surface | srtA | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15304642&query_hl=78 |
| fig|158879.1.peg.2401 | cell_surface | srtA | flowcity.bsd.uchicago.edu/osrf/staph/staphreference.pdf |
| fig|158879.1.peg.2376 | cell_surface | Fibronectin binding | http://www.rockefeller.edu/vaf/surfall99.htm |
| fig|158879.1.peg.2376 | cell_surface | Fibronectin binding | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1837266&query_hl=95 |
| fig|158879.1.peg.2375 | cell_surface | Fibronectin binding | http://www.rockefeller.edu/vaf/surfall99.htm |
| fig|158879.1.peg.2375 | cell_surface | Fibronectin binding | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1837266&query_hl=95 |
| fig|158879.1.peg.2291 | cell_surface | IgG | http://www.rockefeller.edu/vaf/surfall99.htm |
| fig|158879.1.peg.2291 | cell_surface | IgG | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6697996&query_hl=91 |
| fig|158879.1.peg.2013 | cell_surface | SAV2144 | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.2013 | cell_surface | SAV2144 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.1976 | cell_surface | ATPF | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.1976 | cell_surface | ATPF | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.1938 | cell_surface | SAV2068 | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.1938 | cell_surface | SAV2068 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.1907 | cell_surface | AGRD | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.1907 | cell_surface | AGRD | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.1900 | cell_surface | GROES | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.1900 | cell_surface | GROES | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.1815 | cell_surface | SAK | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.1815 | cell_surface | SAK | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.1735 | cell_surface | SAV1866 | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.1735 | cell_surface | SAV1866 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.1695 | cell_surface | YENT2 | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.1695 | cell_surface | YENT2 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
| fig|158879.1.peg.1682 | cell_surface | SPLA | Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus, Nandakumar et al, Proteome Res., 4 (2), 250 -257, 2005 |
| fig|158879.1.peg.1682 | cell_surface | SPLA | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15822900&query_hl=3 |
established_antibiotic_inhibitor
Antibiotic inhibition properties of a PEG, encoded as a description and a URL.
| Object | Key | Values | |
|---|---|---|---|
| fig|158879.1.peg.1236 | established_antibiotic_inhibitor | msrA, Genes Controlling MLS Resistance in Methicillin-Resistant Staphylococcus aureus | http://www.interacademies.net/IAMP/IAMPhome.nsf/(attachmentweb)/Spizek.pdf/$FILE/Spizek.pdf |
| fig|158879.1.peg.1529 | established_antibiotic_inhibitor | ermA, Genes Controlling MLS Resistance in Methicillin-Resistant Staphylococcus aureus | http://www.interacademies.net/IAMP/IAMPhome.nsf/(attachmentweb)/Spizek.pdf/$FILE/Spizek.pdf |
| fig|158879.1.peg.2018 | established_antibiotic_inhibitor | ermA, Genes Controlling MLS Resistance in Methicillin-Resistant Staphylococcus aureus | http://www.interacademies.net/IAMP/IAMPhome.nsf/(attachmentweb)/Spizek.pdf/$FILE/Spizek.pdf |
| fig|158879.1.peg.2019 | established_antibiotic_inhibitor | linA, Genes Controlling MLS Resistance in Methicillin-Resistant Staphylococcus aureus | http://www.interacademies.net/IAMP/IAMPhome.nsf/(attachmentweb)/Spizek.pdf/$FILE/Spizek.pdf |
| fig|158879.1.peg.2471 | established_antibiotic_inhibitor | ermA, Genes Controlling MLS Resistance in Methicillin-Resistant Staphylococcus aureus | http://www.interacademies.net/IAMP/IAMPhome.nsf/(attachmentweb)/Spizek.pdf/$FILE/Spizek.pdf |
| fig|158879.1.peg.2540 | established_antibiotic_inhibitor | msrA, Genes Controlling MLS Resistance in Methicillin-Resistant Staphylococcus aureus | http://www.interacademies.net/IAMP/IAMPhome.nsf/(attachmentweb)/Spizek.pdf/$FILE/Spizek.pdf |
| fig|158879.1.peg.50 | established_antibiotic_inhibitor | ermA, Genes Controlling MLS Resistance in Methicillin-Resistant Staphylococcus aureus | http://www.interacademies.net/IAMP/IAMPhome.nsf/(attachmentweb)/Spizek.pdf/$FILE/Spizek.pdf |
| fig|158879.1.peg.785 | established_antibiotic_inhibitor | linA, Genes Controlling MLS Resistance in Methicillin-Resistant Staphylococcus aureus | http://www.interacademies.net/IAMP/IAMPhome.nsf/(attachmentweb)/Spizek.pdf/$FILE/Spizek.pdf |
| fig|158879.1.peg.786 | established_antibiotic_inhibitor | ermA, Genes Controlling MLS Resistance in Methicillin-Resistant Staphylococcus aureus | http://www.interacademies.net/IAMP/IAMPhome.nsf/(attachmentweb)/Spizek.pdf/$FILE/Spizek.pdf |
established_antibiotic_target
Indicates that a PEG is targeted by an antibiotic. Encoded as a description of the antibiotic and its role (e.g. "MurA, inhibited by phosphomycin"), and a URL.
evidence_code
Evidence for an annotation, generally encoded as a code word and a description.
| Object | Key | Values |
|---|---|---|
| fig|384676.6.peg.1491 | evidence_code | cwh |
| fig|384676.6.peg.1489 | evidence_code | cwh |
| fig|384676.6.peg.1357 | evidence_code | cwh |
| fig|384676.6.peg.1320 | evidence_code | cwh |
| fig|384676.6.peg.1247 | evidence_code | cwh |
| fig|384676.6.peg.1180 | evidence_code | cwh |
| fig|384676.6.peg.1134 | evidence_code | cwh |
| fig|384676.6.peg.815 | evidence_code | cwh |
| fig|384676.6.peg.783 | evidence_code | cwh |
| fig|384676.6.peg.756 | evidence_code | cwh |
| fig|384676.6.peg.690 | evidence_code | cwh |
| fig|384676.6.peg.650 | evidence_code | cwh |
| fig|384676.6.peg.317 | evidence_code | cwh |
| fig|384676.6.peg.128 | evidence_code | cwh |
| fig|384676.6.peg.112 | evidence_code | cwh |
| fig|384676.6.peg.94 | evidence_code | cwh |
| fig|382638.8.peg.1213 | evidence_code | cwh |
| fig|382638.8.peg.1068 | evidence_code | cwh |
| fig|382638.8.peg.1005 | evidence_code | cwh |
| fig|382638.8.peg.1003 | evidence_code | cwh |
| fig|382638.8.peg.872 | evidence_code | cwh |
| fig|382638.8.peg.440 | evidence_code | cwh |
| fig|382638.8.peg.394 | evidence_code | cwh |
| fig|375451.6.peg.3917 | evidence_code | cwh |
| fig|375451.6.peg.3813 | evidence_code | cwh |
| fig|375451.6.peg.3819 | evidence_code | cwh |
| fig|375451.6.peg.3825 | evidence_code | cwh |
| fig|375451.6.peg.3812 | evidence_code | cwh |
| fig|375451.6.peg.3391 | evidence_code | cwh |
| fig|375451.6.peg.3214 | evidence_code | cwh |
| fig|375451.6.peg.3104 | evidence_code | cwh |
| fig|375451.6.peg.2869 | evidence_code | cwh |
| fig|375451.6.peg.2821 | evidence_code | cwh |
| fig|375451.6.peg.2691 | evidence_code | cwh |
| fig|375451.6.peg.2602 | evidence_code | cwh |
| fig|375451.6.peg.2590 | evidence_code | cwh |
| fig|375451.6.peg.1928 | evidence_code | cwh |
| fig|375451.6.peg.1705 | evidence_code | cwh |
| fig|375451.6.peg.1626 | evidence_code | cwh |
| fig|375451.6.peg.1482 | evidence_code | cwh |
| fig|375451.6.peg.1429 | evidence_code | cwh |
| fig|375451.6.peg.1037 | evidence_code | cwh |
| fig|375451.6.peg.838 | evidence_code | cwh |
| fig|375451.6.peg.583 | evidence_code | cwh |
| fig|375451.6.peg.584 | evidence_code | cwh |
| fig|375451.6.peg.494 | evidence_code | cwh |
| fig|375451.6.peg.453 | evidence_code | cwh |
| fig|362976.6.peg.2283 | evidence_code | cwh |
| fig|362976.6.peg.2281 | evidence_code | cwh |
| fig|362976.6.peg.2272 | evidence_code | cwh |
iedb_epitopelinearsequence
Protein subsequence that is used by antibodies to identify the parent organism, encoded as protein letter codes and a URL to the IEDB page.
iedb_epitopename
Name assigned by the IEDB for the protein subsequence that is used by antibodies to identify the parent organism.
| Object | Key | Values |
|---|---|---|
| fig|32606.1.peg.92 | iedb_epitopename | #2-H5R |
| fig|9913.1.peg.1092 | iedb_epitopename | α386-411, c |
| fig|9606.3.peg.18940 | iedb_epitopename | α386-411, h |
| fig|9606.3.peg.6598 | iedb_epitopename | αB-crystallin peptide 161-175 |
| fig|9913.1.peg.402 | iedb_epitopename | ε194-209 |
| fig|9913.1.peg.403 | iedb_epitopename | γ194-209 |
| fig|183764.1.peg.4 | iedb_epitopename | 126-138 |
| fig|37112.1.peg.7 | iedb_epitopename | 15 |
| fig|10381.1.peg.35 | iedb_epitopename | 18 |
| fig|32604.1.peg.83 | iedb_epitopename | 19 |
| fig|11320.1.peg.9 | iedb_epitopename | 1 |
| fig|28300.1.peg.4 | iedb_epitopename | 20 |
| fig|11079.1.peg.1 | iedb_epitopename | 2100b |
| fig|217686.1.peg.3 | iedb_epitopename | 21 |
| fig|10243.1.peg.211 | iedb_epitopename | 22 |
| fig|9606.3.peg.13444 | iedb_epitopename | 28 |
| fig|10116.3.peg.5743 | iedb_epitopename | 3000.0001 |
| fig|10090.3.peg.15539 | iedb_epitopename | 3000.0027 |
| fig|10090.3.peg.10352 | iedb_epitopename | 3000.0128 |
| fig|9606.3.peg.31393 | iedb_epitopename | 3000.0252 |
| fig|9606.3.peg.25664 | iedb_epitopename | 3002.0084 |
| fig|9606.3.peg.7243 | iedb_epitopename | 3002.0133 |
| fig|11320.1.peg.9 | iedb_epitopename | 3006.0443 |
| fig|32606.1.peg.81 | iedb_epitopename | 3007.0259 |
| fig|32606.1.peg.127 | iedb_epitopename | 3007.0453 |
| fig|32606.1.peg.130 | iedb_epitopename | 3007.0467 |
| fig|10245.1.peg.184 | iedb_epitopename | 3007.0485 |
| fig|10245.1.peg.84 | iedb_epitopename | 3007.1057 |
| fig|10245.1.peg.150 | iedb_epitopename | 3007.1250 |
| fig|10245.1.peg.189 | iedb_epitopename | 3007.1386 |
| fig|10245.1.peg.194 | iedb_epitopename | 3007.1393 |
| fig|227859.1.peg.8 | iedb_epitopename | 3011.0132 |
| fig|227859.1.peg.1 | iedb_epitopename | 3011.0533 |
| fig|227859.1.peg.5 | iedb_epitopename | 3011.0666 |
| fig|227859.1.peg.6 | iedb_epitopename | 3011.0670 |
| fig|227859.1.peg.7 | iedb_epitopename | 3011.0671 |
| fig|227859.1.peg.9 | iedb_epitopename | 3011.0679 |
| fig|227859.1.peg.10 | iedb_epitopename | 3011.0680 |
| fig|227859.1.peg.12 | iedb_epitopename | 3011.0682 |
| fig|227859.1.peg.13 | iedb_epitopename | 3011.0684 |
| fig|227859.1.peg.14 | iedb_epitopename | 3011.0741 |
| fig|227859.1.peg.11 | iedb_epitopename | 3011.1170 |
| fig|227859.1.peg.1 | iedb_epitopename | 3012.0396 |
| fig|227859.1.peg.5 | iedb_epitopename | 3012.0638 |
| fig|227859.1.peg.6 | iedb_epitopename | 3012.0655 |
| fig|227859.1.peg.7 | iedb_epitopename | 3012.0671 |
| fig|227859.1.peg.8 | iedb_epitopename | 3012.0700 |
| fig|227859.1.peg.9 | iedb_epitopename | 3012.0709 |
| fig|227859.1.peg.12 | iedb_epitopename | 3012.0729 |
| fig|227859.1.peg.13 | iedb_epitopename | 3012.0732 |
isoelectric_point
pH in the surrounding medium at which the charge on a protein is neutral. If the pH of the medium is lower than this value, the protein will have a net positive charge. If the pH of the medium is higher, then the protein will have a net negative charge.
| Object | Key | Values |
|---|---|---|
| fig|203122.1.peg.3474 | isoelectric_point | 1.54 |
| fig|31033.3.peg.4595 | isoelectric_point | 1.71 |
| fig|313590.3.peg.697 | isoelectric_point | 1.92 |
| fig|9031.3.peg.17350 | isoelectric_point | 10.00 |
| fig|9031.3.peg.17351 | isoelectric_point | 10.00 |
| fig|9031.3.peg.17664 | isoelectric_point | 10.00 |
| fig|9031.3.peg.17860 | isoelectric_point | 10.00 |
| fig|9031.3.peg.18065 | isoelectric_point | 10.00 |
| fig|9031.3.peg.19356 | isoelectric_point | 10.00 |
| fig|9031.3.peg.19845 | isoelectric_point | 10.00 |
| fig|9031.3.peg.20008 | isoelectric_point | 10.00 |
| fig|9031.3.peg.20252 | isoelectric_point | 10.00 |
| fig|9031.3.peg.23830 | isoelectric_point | 10.00 |
| fig|9031.3.peg.24662 | isoelectric_point | 10.00 |
| fig|8364.3.peg.420 | isoelectric_point | 10.00 |
| fig|8364.3.peg.491 | isoelectric_point | 10.00 |
| fig|8364.3.peg.1808 | isoelectric_point | 10.00 |
| fig|8364.3.peg.5364 | isoelectric_point | 10.00 |
| fig|8364.3.peg.6060 | isoelectric_point | 10.00 |
| fig|8364.3.peg.9643 | isoelectric_point | 10.00 |
| fig|8364.3.peg.10517 | isoelectric_point | 10.00 |
| fig|8364.3.peg.11339 | isoelectric_point | 10.00 |
| fig|8364.3.peg.12350 | isoelectric_point | 10.00 |
| fig|8364.3.peg.13372 | isoelectric_point | 10.00 |
| fig|8364.3.peg.15431 | isoelectric_point | 10.00 |
| fig|8364.3.peg.15630 | isoelectric_point | 10.00 |
| fig|8364.3.peg.16509 | isoelectric_point | 10.00 |
| fig|8364.3.peg.16956 | isoelectric_point | 10.00 |
| fig|8364.3.peg.17071 | isoelectric_point | 10.00 |
| fig|8364.3.peg.19745 | isoelectric_point | 10.00 |
| fig|8364.3.peg.20022 | isoelectric_point | 10.00 |
| fig|8364.3.peg.20426 | isoelectric_point | 10.00 |
| fig|8364.3.peg.20732 | isoelectric_point | 10.00 |
| fig|8364.3.peg.21210 | isoelectric_point | 10.00 |
| fig|8364.3.peg.21321 | isoelectric_point | 10.00 |
| fig|8364.3.peg.21827 | isoelectric_point | 10.00 |
| fig|8364.3.peg.23090 | isoelectric_point | 10.00 |
| fig|8364.3.peg.23483 | isoelectric_point | 10.00 |
| fig|8364.3.peg.23883 | isoelectric_point | 10.00 |
| fig|8364.3.peg.25047 | isoelectric_point | 10.00 |
| fig|8364.3.peg.25357 | isoelectric_point | 10.00 |
| fig|8364.3.peg.25449 | isoelectric_point | 10.00 |
| fig|8364.3.peg.25450 | isoelectric_point | 10.00 |
| fig|8364.3.peg.27471 | isoelectric_point | 10.00 |
| fig|8364.3.peg.27491 | isoelectric_point | 10.00 |
| fig|8364.3.peg.28199 | isoelectric_point | 10.00 |
| fig|8364.3.peg.28618 | isoelectric_point | 10.00 |
| fig|8364.3.peg.30785 | isoelectric_point | 10.00 |
| fig|8364.3.peg.31057 | isoelectric_point | 10.00 |
| fig|8364.3.peg.31171 | isoelectric_point | 10.00 |
microarray_sigmaB_regulon
Indication that a peg has been demonstrated in a microarray experiment to be regulated by the sigmaB stress transcription factor, generally encoded as a description ("up regulon" or "down regulon") and a URL.