Search the NMPDR Database

Difference Report for NMPDR 21

New Genomes: one
12149.1 Salmonella bongori 12149(4664 features; 0 BBHs)
Deleted Subsystems: 2
CbiQO-type ABC transporter systems master:rodionov
Trehalose biosynthesis master:MattC
New Subsystems: 10
2-Ketogluconate Utilization master:OlgaZ
Bacterial RNA-metabolizing Zn-dependent hydrolases master:SvetaG
Betaine Biosynthesis and Uptake master:OlgaZ
Heme, hemin uptake and utilization systems in GramPositives master:SvetaG
Leucine Biosynthesis master:OlgaZ
Pyrroloquinoline Quinone biosynthesis master:OlgaZ
Threonine and Homoserine Biosynthesis master:OlgaZ
Trehalose Biosynthesis master:OlgaZ
Type III secretion system orphans master:gjo
tRNA aminoacylase paralogs master:gjo
Statistics for old Sprout
Genomes 504
Subsystems 456
Roles 7315
External function assignments 16059004
Features 2129008
Statistics for new Sprout
Genomes 505
Subsystems 464
Roles 7449
External function assignments 16059004
Features 2142377
BBHs 90386090
Functional Couplings 2823884
Candidates for Campylobacter: one
Campylobacter fetus subsp. fetus 82-40 360106.3

Genome Report for NMPDR v21

Genome Size (bp) Feats Contigs Subs F In SS PEGs RNAs PPs
Streptomyces coelicolor A3(2) (100226.1} 9054847 8239 3 276 1577 8154 83 1
Mus musculus (House mouse) (10090.3} 2759050163 31535 3379 141 1134 31535 0 0
Bacillus B-14905 (101031.3} 4497271 4593 99 179 1176 4494 99 0
Rattus norvegicus (Norway rat) (10116.3} 2718897658 32543 2582 131 946 32543 0 0
Nostoc sp. PCC 7120 (103690.1} 7211789 6363 7 261 1292 6176 79 0
Buchnera aphidicola str. APS (Acyrthosiphon pisum) (107806.1} 655725 623 3 154 483 586 35 0
Rhodospirillum rubrum (1085.1} 4403907 3891 10 277 1393 3827 64 0
Synechococcus sp. CC9605 (110662.3} 2510659 2693 1 196 835 2639 51 0
Synechococcus elongatus PCC 7942 (1140.3} 2796470 2854 4 217 953 2728 50 0
Synechocystis sp. PCC 6803 (1148.1} 3949364 3614 6 251 1107 3467 49 0
Chlamydophila pneumoniae AR39 (115711.1} 1229858 1183 1 135 382 1139 41 0
Chlamydophila pneumoniae CWL029 (115713.1} 1230230 1124 1 133 393 1081 41 0
Salmonella bongori 12149(4664 features; 0 BBHs) (12149.1} 4460105 4664 1 191 1392 4559 105 0
Neisseria meningitidis MC58 (122586.1} 2272351 2329 1 211 826 2246 71 2
Neisseria meningitidis Z2491 (122587.1} 2184406 2267 1 212 811 2176 70 3
Pediococcus pentosaceus (1255.1} 1747651 1769 85 175 629 1707 62 0
Streptococcus pyogenes M5 (1314.1} 1863186 1944 19 233 840 1868 76 0
Burkholderia fungorum (134537.1} 9638173 8500 435 296 2471 8445 55 0
Desulfitobacterium sp. Y51 (138119.3} 5727534 5137 1 168 1320 5060 77 0
Chlamydophila pneumoniae J138 (138677.1} 1226565 1121 1 133 388 1081 38 0
Clostridium botulinum ATCC 3502 (1491.1} 3869593 3762 114 247 1175 3662 100 0
Clostridium difficile 630 (1496.1} 4273594 4028 29 256 1220 3936 92 0
Vibrio sp. Ex25 (150340.3} 4839877 4236 260 242 1589 4236 0 0
Escherichia coli O157:H7 EDL933 (155864.1} 5528445 6134 1 309 1976 5323 120 16
Xylella fastidiosa Ann-1 (155920.1} 2674522 2395 134 204 817 2346 49 0
uncultured Chlorobi bacterium (156405.1} 2591934 2421 32 210 784 2372 49 0
Flavobacteria sp. BBFL7 (156586.3} 3083153 2875 16 179 732 2839 36 0
Magnetococcus sp. MC-1 (156889.1} 4628740 4109 108 226 1060 4058 51 0
Staphylococcus aureus subsp. aureus Mu50 (158878.1} 2903147 2938 2 269 1270 2769 76 3
Staphylococcus aureus subsp. aureus N315 (158879.1} 2839469 2820 2 271 1207 2646 78 0
Dechloromonas aromatica RCB (159087.4} 4501104 4248 1 252 1426 4172 76 0
Lactobacillus gasseri (1596.1} 2009607 1769 45 189 611 1726 43 0
Pseudomonas putida KT2440 (160488.1} 6181863 5633 1 284 1777 5533 21 4
Streptococcus pyogenes M1 GAS (160490.1} 1852441 1873 1 233 821 1728 72 4
Xylella fastidiosa 9a5c (160492.1} 2731750 2986 3 212 843 2918 55 10
Wolbachia sp. endosymbiont of Drosophila melanogaster (163164.1} 1267782 1352 1 148 465 1310 37 0
Mycobacterium sp. MCS (164756.6} 5705448 5196 1 101 937 5142 54 0
Prochlorococcus marinus subsp. marinus str. CCMP1375 (167539.1} 1751080 1939 1 203 792 1886 43 0
Colwellia psychrerythraea 34H (167879.3} 5373180 5041 1 240 1427 4910 116 0
Bifidobacterium adolescentis (1680.3} 2084445 1631 12 136 511 1565 66 0
Listeria monocytogenes EGD-e (169963.1} 2944528 3056 1 262 1354 2865 85 2
Streptococcus pneumoniae TIGR4 (170187.1} 2160837 2418 1 226 883 2236 70 0
Streptococcus pneumoniae R6 (171101.1} 2038615 2225 1 229 878 2043 70 0
Photorhabdus asymbiotica subsp. asymbiotica (171440.1} 4964387 4229 123 276 1400 4135 94 0
Staphylococcus epidermidis RP62A (176279.3} 2643840 2624 2 219 938 2526 80 0
Staphylococcus epidermidis ATCC 12228 (176280.1} 2564615 2567 7 252 1057 2470 76 0
Agrobacterium tumefaciens str. C58 (176299.3} 5674064 5470 4 276 1892 5405 65 0
Agrobacterium tumefaciens str. C58 (176299.4} 5673465 5428 4 259 1732 5298 64 0
Francisella tularensis subsp. tularensis Schu 4 (177416.3} 1892819 1659 1 194 698 1605 48 0
Desulfotalea psychrophila LSv54 (177439.1} 3659634 3355 3 212 896 3240 87 0
Pyrobaculum aerophilum str. IM2 (178306.1} 2222430 2658 1 162 546 2607 45 0
Anopheles gambiae str. PEST (180454.1} 255657381 16056 1345 149 865 16056 0 0
Mycobacterium microti OV254 (1806.1} 4325497 4281 254 242 1079 4233 48 0
Chlamydophila pneumoniae TW-183 (182082.1} 1225935 1168 1 134 384 1125 41 0
Xylella fastidiosa Temecula1 (183190.1} 2521148 2231 2 210 803 2164 55 6
Streptococcus pyogenes MGAS8232 (186103.1} 1895017 1974 1 231 821 1911 12 5
Pyrococcus furiosus DSM 3638 (186497.1} 1908256 2151 1 165 597 2068 50 0
Alkalilimnicola ehrlichei MLHE-1 (187272.6} 3275944 2805 1 98 722 2751 54 0
Yersinia pestis KIM (187410.1} 4953402 4826 6 302 1646 4634 97 4
Methanothermobacter thermautotrophicus str. Delta H (187420.1} 1751377 1939 1 172 651 1873 45 0
Methanosarcina acetivorans C2A (188937.1} 5751492 4561 1 208 956 4542 10 0
Leptospira interrogans serovar Lai str. 56601 (189518.1} 4691184 4796 2 204 878 4752 41 0
Methanopyrus kandleri AV19 (190192.1} 1694969 1727 1 149 546 1688 38 0
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (190304.1} 2174500 2151 1 215 790 2076 62 0
Xanthomonas campestris pv. campestris ATCC 33913 (190485.1} 5076188 4306 1 275 1362 4246 59 0
Xanthomonas axonopodis pv. citri str. 306 (190486.1} 5274174 4548 3 273 1369 4486 60 2
Caulobacter crescentus CB15 (190650.1} 4016947 4249 1 263 1250 3878 57 1
Campylobacter jejuni subsp. jejuni NCTC 11168 (192222.1} 1641481 1691 1 220 856 1633 54 0
Methanosarcina mazei Go1 (192952.1} 4096345 3451 1 207 898 3372 67 0
Streptococcus pyogenes SSI-1 (193567.1} 1894275 2033 1 233 812 1910 67 0
Chlorobium tepidum TLS (194439.1} 2154946 2373 1 239 900 2316 56 0
Campylobacter jejuni RM1221 (195099.3} 1777831 1889 1 216 833 1838 50 0
Clostridium perfringens str. 13 (195102.1} 3085740 2905 2 233 1010 2732 125 1
Corynebacterium efficiens YS-314 (196164.1} 3147090 3022 1 239 894 2993 25 0
Vibrio vulnificus YJ016 (196600.1} 5260086 5091 3 293 1705 4923 140 0
Staphylococcus aureus subsp. aureus MW2 (196620.1} 2820462 2755 1 268 1181 2642 21 2
Corynebacterium glutamicum ATCC 13032 (196627.3} 3282708 3135 1 216 801 3057 78 0
Corynebacterium glutamicum ATCC 13032 (196627.4} 3309401 3083 1 248 933 2994 79 0
Thermosynechococcus elongatus BP-1 (197221.1} 2593857 2540 1 219 912 2490 45 0
Bacillus anthracis str. Ames (198094.1} 5227293 5858 1 276 1547 5664 128 0
Shigella flexneri 2a str. 301 (198214.1} 4607203 4328 1 302 1759 4186 119 11
Shigella flexneri 2a str. 2457T (198215.1} 4599354 4214 1 303 1738 4074 120 0
Streptococcus pyogenes MGAS315 (198466.1} 1900521 2034 1 233 815 1888 79 6
Buchnera aphidicola str. Sg (Schizaphis graminum) (198804.1} 641454 634 1 148 465 598 35 0
Escherichia coli CFT073 (199310.1} 5231428 6117 1 308 1972 5384 110 8
Clostridium thermocellum ATCC 27405 (203119.1} 3743645 3641 133 239 929 3580 61 0
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (203120.1} 2128736 2271 303 185 759 2187 84 0
Microbulbifer degradans 2-40 (203122.1} 5041802 4413 27 241 1204 4365 48 0
Oenococcus oeni PSU-1 (203123.1} 1759776 1964 34 192 698 1917 47 0
Trichodesmium erythraeum IMS101 (203124.1} 7786629 6352 71 243 1178 6311 41 0
Tropheryma whipplei str. Twist (203267.1} 927303 893 1 159 458 836 52 0
Candidatus Blochmannia floridanus (203907.1} 705557 636 1 156 464 589 40 0
Acidobacteria bacterium Ellin345 (204669.6} 5650368 4807 1 103 823 4757 50 0
Brucella suis 1330 (204722.1} 3315173 3522 2 257 1263 3455 64 0
Bifidobacterium longum DJO10A (205913.1} 2375286 2097 117 191 614 2035 62 0
Haemophilus somnus 129PT (205914.1} 2114487 1848 64 230 860 1797 51 0
Pseudomonas syringae pv. syringae B728a (205918.4} 6093698 5187 1 294 1668 5090 80 0
Ehrlichia chaffeensis str. Arkansas (205920.8} 1176248 980 1 62 271 941 39 0
Streptococcus agalactiae A909 (205921.3} 2127839 2116 1 210 810 1996 101 0
Pseudomonas fluorescens PfO-1 (205922.3} 6438405 5835 1 289 1902 5736 92 0
Bifidobacterium longum NCC2705 (206672.1} 2260272 1951 2 201 639 1878 69 1
Desulfovibrio desulfuricans G20 (207559.3} 3730232 3915 1 247 1076 3778 78 0
Streptococcus agalactiae 2603V/R (208435.1} 2160267 2320 1 226 849 2193 96 2
Pseudomonas aeruginosa UCBPP-PA14 (208963.1} 6524142 6256 5 291 1874 6188 68 0
Pseudomonas aeruginosa PAO1 (208964.1} 6264403 6305 1 301 1940 5684 75 2
Salmonella enterica subsp. enterica serovar Typhi Ty2 (209261.1} 4791961 4440 1 307 1867 4323 100 0
Streptococcus mutans UA159 (210007.1} 2030921 2084 1 224 799 1971 79 0
Streptococcus agalactiae NEM316 (211110.1} 2211485 2257 1 229 862 2130 101 0
Shewanella oneidensis MR-1 (211586.1} 5131416 4651 2 263 1421 4472 129 3
Anaplasma phagocytophilum HZ (212042.5} 1471282 1396 1 62 293 1356 40 0
Clostridium tetani E88 (212717.1} 2799251 2766 1 223 916 2637 72 3
Yersinia pestis CO92 (214092.1} 4829855 4481 4 303 1654 4290 89 8
Croceibacter atlanticus HTCC2559 (216432.3} 2954711 2758 6 173 701 2718 40 0
Burkholderia cenocepacia J2315 (216591.1} 7991339 7902 86 300 2254 7820 82 0
Escherichia coli 042 (216592.1} 5379979 5827 28 318 2060 5715 112 0
Escherichia coli E2348/69 (216593.1} 5059346 5514 24 310 2011 5404 110 0
Mycobacterium marinum M (216594.1} 6563896 5819 36 267 1346 5770 49 0
Pseudomonas fluorescens SBW25 (216595.1} 6708881 6319 44 299 2012 6240 79 0
Rhizobium leguminosarum bv. viciae 3841 (216596.1} 7760430 7460 20 286 1954 7401 59 0
Shigella dysenteriae M131649 (216598.1} 4857258 6365 208 310 1929 6285 80 0
Shigella sonnei 53G (216599.1} 5260865 5954 84 314 2011 5851 103 0
Vibrio vulnificus CMCP6 (216895.1} 5126798 4648 2 289 1681 4512 111 0
Helicobacter mustelae 43772 (217.1} 1575184 1890 19 200 681 1890 0 0
Erwinia carotovora subsp. atroseptica SCRI1043 (218491.3} 5064019 4578 1 294 1708 4472 98 0
Tropheryma whipplei TW08/27 (218496.1} 925938 874 1 149 433 816 54 0
Chlamydophila abortus S26/3 (218497.4} 1144377 978 1 130 384 933 41 0
Salmonella enterica subsp. enterica serovar Typhi str. CT18 (220341.1} 5133713 4886 3 311 1908 4762 102 11
Pseudomonas fluorescens Pf-5 (220664.3} 7074893 6237 1 273 2026 6137 86 0
Lactobacillus plantarum WCFS1 (220668.1} 3308274 3194 1 231 1006 3059 85 0
Oceanobacillus iheyensis HTE831 (221109.1} 3630528 3627 1 246 1242 3523 91 0
Synechococcus sp. RS9917 (221360.3} 2579542 2983 9 190 869 2934 49 0
Mannheimia succiniciproducens MBEL55E (221988.1} 2314078 2244 1 236 977 2241 0 0
Bacillus cereus ATCC 10987 (222523.1} 5432652 6076 2 274 1542 5921 133 0
Neorickettsia sennetsu str. Miyayama (222891.5} 859006 805 1 53 234 770 35 0
Pseudomonas syringae pv. tomato str. DC3000 (223283.1} 6538260 5899 3 295 1680 5807 78 0
Vibrio parahaemolyticus RIMD 2210633 (223926.1} 5165770 5055 2 290 1710 4864 160 0
Bacillus subtilis subsp. subtilis str. 168 (224308.1} 4214814 4508 1 276 1489 4113 118 4
Aquifex aeolicus VF5 (224324.1} 1590791 1613 2 211 752 1560 50 0
Archaeoglobus fulgidus DSM 4304 (224325.1} 2178400 2431 1 184 701 2420 4 0
Borrelia burgdorferi B31 (224326.1} 1519856 1718 22 137 399 1688 23 0
Bradyrhizobium japonicum USDA 110 (224911.1} 9105828 8747 1 289 1943 8593 53 0
Brucella melitensis 16M (224914.1} 3294931 3308 2 261 1290 3239 66 1
Buchnera aphidicola str. Bp (Baizongia pistaciae) (224915.1} 615980 550 1 143 415 508 35 0
Enterococcus faecalis V583 (226185.1} 3359974 3468 4 229 1031 3361 80 0
Bacteroides thetaiotaomicron VPI-5482 (226186.1} 6260361 4940 1 230 961 4832 86 0
Bacillus cereus ATCC 14579 (226900.1} 5426909 5716 2 274 1617 5557 142 0
Coxiella burnetii RSA 493 (227377.1} 2032668 2229 2 198 697 2180 44 0
Streptomyces avermitilis MA-4680 (227882.1} 9119895 7879 2 272 1503 7792 86 0
Chlamydophila caviae GPIC (227941.1} 1181356 1029 2 143 397 1023 3 0
Actinobacillus pleuropneumoniae serovar 1 str. 4074 (228399.1} 2292348 2242 128 229 926 2178 64 0
Haemophilus somnus 2336 (228400.1} 2247676 2154 98 224 842 2101 53 0
Hyphomonas neptunium ATCC 15444 (228405.5} 3705021 3460 1 96 776 3414 46 0
Nitrosomonas europaea ATCC 19718 (228410.1} 2812094 2634 1 221 931 2579 45 0
Nanoarchaeum equitans Kin4-M (228908.1} 490885 561 1 59 192 540 17 0
Yersinia pestis biovar Medievalis str. 91001 (229193.1} 4803217 4539 5 304 1663 4355 94 0
Gibberella zeae PH-1 (229533.1} 36095936 11935 463 141 714 11640 295 0
Mycoplasma gallisepticum R (233150.3} 996422 768 1 109 309 726 39 0
Haemophilus ducreyi 35000HP (233412.1} 1698955 1897 1 203 801 1821 64 0
Mycobacterium bovis AF2122/97 (233413.1} 4345492 4067 1 247 1030 4008 48 0
Solibacter usitatus Ellin6076 (234267.9} 9965640 7606 1 98 1086 7548 58 0
Anaplasma marginale str. St. Maries (234826.3} 1197687 989 1 159 511 949 37 0
Brucella abortus (235.1} 3271904 3398 75 259 1389 3342 56 0
Helicobacter hepaticus ATCC 51449 (235279.1} 1799146 1925 1 206 747 1877 40 0
Geobacillus kaustophilus HTA426 (235909.3} 3592666 3664 2 254 1392 3540 114 0
Erythrobacter sp. NAP1 (237727.3} 3265346 3279 3 205 925 3234 45 0
Anabaena variabilis ATCC 29413 (240292.3} 7068601 5735 4 258 1392 5657 59 0
Neisseria gonorrhoeae FA 1090 (242231.4} 2153922 2088 1 217 820 2019 67 0
Magnaporthe grisea 70-15 (242507.1} 41780516 11420 141 138 643 11109 311 0
Porphyromonas gingivalis W83 (242619.1} 2343476 1984 1 190 604 1911 65 0
Pirellula sp. 1 (243090.1} 7145576 7514 1 227 890 7433 79 0
Burkholderia mallei ATCC 23344 (243160.4} 5835527 5095 2 261 1616 5028 66 0
Chlamydia muridarum Nigg (243161.4} 1080451 961 2 133 369 911 43 0
Dehalococcoides ethenogenes 195 (243164.3} 1469720 1631 1 157 499 1580 49 0
Deinococcus radiodurans R1 (243230.1} 3284156 3244 4 240 941 3183 58 2
Geobacter sulfurreducens PCA (243231.1} 3814139 3530 1 237 1106 3449 55 0
Methanocaldococcus jannaschii DSM 2661 (243232.1} 1739927 1844 3 162 584 1785 43 0
Methylococcus capsulatus str. Bath (243233.4} 3304561 3013 1 233 1180 2961 52 0
Photorhabdus luminescens subsp. laumondii TTO1 (243265.1} 5688987 4959 1 284 1463 4829 107 0
Mycoplasma genitalium G-37 (243273.1} 580074 523 1 105 271 484 39 0
Thermotoga maritima MSB8 (243274.1} 1860725 1961 1 226 826 1905 49 0
Treponema denticola ATCC 35405 (243275.1} 2843201 2826 1 184 618 2768 48 0
Treponema pallidum subsp. pallidum str. Nichols (243276.1} 1138011 1107 1 143 410 1055 51 0
Vibrio cholerae O1 biovar eltor str. N16961 (243277.1} 4033464 4193 2 286 1540 3907 122 2
Chromobacterium violaceum ATCC 12472 (243365.1} 4751080 4635 1 264 1392 4498 122 0
Carboxydothermus hydrogenoformans Z-2901 (246194.3} 2401520 2686 1 228 1069 2620 62 0
Mycobacterium smegmatis str. MC2 155 (246196.1} 6988209 6815 1 247 1203 6815 0 0
Silicibacter pomeroyi DSS-3 (246200.3} 4601053 4320 2 257 1310 4252 62 0
Streptococcus mitis NCTC 12261 (246201.1} 2045857 2246 1 210 884 2168 78 0
Nocardia farcinica IFM 10152 (247156.1} 6292344 5611 3 266 1404 5611 0 0
Gloeobacter violaceus PCC 7421 (251221.1} 4659019 4528 1 250 1088 4475 47 0
Oceanicola batsensis HTCC2597 (252305.3} 4437668 4590 23 218 1309 4544 46 0
Ehrlichia ruminantium str. Welgevonden (254945.3} 1516355 930 1 136 432 888 39 0
Dehalococcoides sp. CBDB1 (255470.3} 1395502 1512 1 173 593 1458 50 0
Corynebacterium diphtheriae NCTC 13129 (257309.1} 2488635 2423 1 229 802 2344 69 0
Bordetella bronchiseptica RB50 (257310.1} 5339179 5088 1 261 1510 5023 64 0
Bordetella parapertussis 12822 (257311.1} 4773551 4522 1 259 1437 4451 63 0
Bordetella pertussis Tohama I (257313.1} 4086189 3860 1 252 1282 3798 60 0
Lactobacillus johnsonii NCC 533 (257314.1} 1992676 1956 1 189 619 1840 97 0
Rickettsia typhi str. Wilmington (257363.1} 1111496 886 1 150 407 837 39 0
Rhodopseudomonas palustris CGA009 (258594.1} 5467640 4957 2 268 1497 4888 57 0
Psychrobacter sp. 273-4 (259536.3} 2650701 2181 1 211 891 2120 61 0
Psychrobacter sp. 273-4 (259536.4} 2650701 2193 1 233 926 2120 61 0
Methanococcoides burtonii DSM 6242 (259564.1} 2557789 2683 37 193 771 2629 54 0
Bacillus anthracis str. Sterne (260799.1} 5228663 5438 1 265 1441 5287 128 0
Bacillus anthracis str. 'Ames Ancestor' (261594.1} 5503926 5781 3 276 1471 5618 128 0
Mycobacterium avium subsp. paratuberculosis str. k10 (262316.1} 4829781 4560 1 238 982 4505 49 0
Exiguobacterium sp. 255-15 (262543.1} 2894116 3062 138 228 995 2965 97 0
Brucella abortus biovar 1 str. 9-941 (262698.3} 3286445 3165 2 227 1163 3087 64 0
Mycoplasma hyopneumoniae J (262719.3} 897405 699 1 99 279 665 33 0
Mycoplasma hyopneumoniae 7448 (262722.3} 920079 697 1 100 280 663 33 0
Mycoplasma synoviae 53 (262723.3} 799476 714 1 109 293 672 41 0
Thermus thermophilus HB27 (262724.1} 2127482 2284 2 226 822 2231 53 0
Haemophilus influenzae R2846 (262727.1} 1824242 1775 20 225 824 1706 69 0
Haemophilus influenzae R2866 (262728.1} 1933340 1907 4 225 871 1829 78 0
Onion yellows phytoplasma OY-M (262768.1} 860631 896 1 91 273 856 38 0
Picrophilus torridus DSM 9790 (263820.1} 1545895 1588 1 155 496 1536 47 0
Ralstonia eutropha JMP134 (264198.3} 7255290 6533 4 296 2116 6448 84 0
Streptococcus thermophilus LMG 18311 (264199.3} 1796846 1924 1 206 760 1889 0 0
Parachlamydia sp. UWE25 (264201.1} 2414465 2093 1 164 537 2044 44 0
Zymomonas mobilis subsp. mobilis ZM4 (264203.3} 2056416 2102 1 189 743 2001 60 0
Bdellovibrio bacteriovorus HD100 (264462.1} 3782950 3633 1 232 903 3591 36 0
Pseudomonas syringae pv. phaseolicola 1448A (264730.3} 6112448 5261 3 280 1695 5173 79 0
Moorella thermoacetica ATCC 39073 (264732.1} 2628367 2875 36 227 1016 2818 57 0
Methylobacillus flagellatus KT (265072.1} 2783772 2592 35 224 906 2544 48 0
Mesoplasma florum L1 (265311.3} 793224 719 1 113 314 682 35 0
Listeria monocytogenes str. 4b F2365 (265669.1} 2905310 3005 1 256 1297 2855 85 0
Rubrobacter xylanophilus DSM 9941 (266117.1} 3173182 2963 138 241 1000 2914 49 0
Mesorhizobium sp. BNC1 (266779.1} 4922255 4654 22 257 1422 4598 56 0
Sinorhizobium meliloti 1021 (266834.1} 6691694 6395 3 276 1688 6206 63 0
Mesorhizobium loti MAFF303099 (266835.1} 7596300 7508 3 271 1716 7438 60 3
Kineococcus radiotolerans SRS30216 (266940.1} 4893957 4631 183 260 1109 4574 57 0
Methanococcus maripaludis S2 (267377.1} 1661137 1783 1 157 635 1722 47 0
Listeria monocytogenes str. 1/2a F6854 (267409.1} 2950285 3058 132 258 1359 2970 88 0
Listeria monocytogenes str. 4b H7858 (267410.1} 2972254 3150 180 256 1323 3066 84 0
Ralstonia solanacearum GMI1000 (267608.1} 5810922 5251 2 271 1491 5170 69 8
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (267671.1} 4627366 3797 2 214 889 3751 42 0
Propionibacterium acnes KPA171202 (267747.1} 2560265 2353 1 204 744 2297 54 0
Mycoplasma mobile 163K (267748.1} 777079 668 1 107 269 633 34 0
Synechococcus elongatus PCC 6301 (269084.3} 2696255 2648 1 220 980 2525 51 0
Burkholderia cepacia R1808 (269482.1} 8232722 7299 154 291 1903 7229 70 0
Burkholderia cepacia R18194 (269483.3} 8676277 7803 3 292 2224 7717 85 0
Ehrlichia canis str. Jake (269484.4} 1315030 971 1 141 428 925 39 0
Methanosarcina barkeri str. fusaro (269797.3} 4873766 3732 2 187 985 3631 71 0
Geobacter metallireducens GS-15 (269799.3} 4011182 3603 2 249 1216 3532 55 0
Thermobifida fusca YX (269800.4} 3642249 3177 1 236 948 3110 64 0
Bacillus cereus G9241 (269801.1} 5934942 6316 201 258 1380 6147 169 0
Aeropyrum pernix K1 (272557.1} 1669695 1652 1 162 493 1597 52 0
Bacillus halodurans C-125 (272558.1} 4202353 4219 1 272 1397 4099 103 4
Bacteroides fragilis ATCC 25285 (272559.3} 5241700 4332 2 216 983 4232 92 0
Burkholderia pseudomallei K96243 (272560.3} 7247547 5802 2 303 1926 5728 73 0
Chlamydia trachomatis D/UW-3/CX (272561.1} 1042519 946 1 139 404 900 43 0
Clostridium acetobutylicum ATCC 824 (272562.1} 4132880 4070 2 252 1157 3900 106 0
Haloarcula marismortui ATCC 43049 (272569.1} 4274642 4321 9 204 924 4302 0 0
Lactobacillus acidophilus NCFM (272621.3} 1993564 1954 1 179 715 1866 74 0
Lactococcus lactis subsp. lactis Il1403 (272623.1} 2365589 2543 1 233 897 2383 79 6
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (272624.3} 3397754 3003 1 229 1037 2944 52 0
Listeria innocua Clip11262 (272626.1} 3011208 3121 1 254 1340 3005 84 6
Mycobacterium leprae TN (272631.1} 3268203 1664 1 201 671 1609 48 0
Mycoplasma mycoides subsp. mycoides SC str. PG1 (272632.1} 1211703 1062 1 123 352 1021 36 0
Mycoplasma penetrans HF-2 (272633.1} 1358633 1080 1 120 333 1039 32 0
Mycoplasma pneumoniae M129 (272634.1} 816394 731 1 110 277 689 40 0
Mycoplasma pulmonis UAB CTIP (272635.1} 963879 821 1 100 288 782 32 0
Pasteurella multocida subsp. multocida str. Pm70 (272843.1} 2257487 2120 1 245 1046 2026 76 1
Pyrococcus abyssi GE5 (272844.1} 1768562 1948 1 159 566 1897 50 0
Rhodobacter sphaeroides 2.4.1 (272943.3} 4451915 4338 5 272 1383 4126 62 0
Rickettsia conorii str. Malish 7 (272944.1} 1268755 1444 1 152 451 1401 36 0
Rickettsia prowazekii str. Madrid E (272947.1} 1111523 914 1 160 462 857 36 0
Spiroplasma kunkelii CR2-3x (273035.1} 1509972 2663 46 102 380 2663 0 0
Staphylococcus aureus RF122 (273036.3} 2742531 2664 1 221 1106 2516 76 0
Sulfolobus solfataricus P2 (273057.1} 2992245 3060 1 185 697 2977 50 0
Sulfolobus tokodaii str. 7 (273063.1} 2694756 2752 1 177 607 2685 48 0
Thermoanaerobacter tengcongensis MB4 (273068.3} 2689445 2690 1 223 954 2591 67 0
Thermoplasma acidophilum DSM 1728 (273075.1} 1564906 1535 1 166 503 1483 48 0
Thermoplasma volcanium GSS1 (273116.1} 1584804 1550 1 170 508 1500 49 0
Ureaplasma parvum serovar 3 ATCC 700970 (273119.1} 751719 651 1 86 243 614 36 0
Wolinella succinogenes DSM 1740 (273121.1} 2110355 2094 1 222 893 2048 45 0
Yersinia pseudotuberculosis IP 32953 (273123.1} 4840899 4166 3 298 1606 4033 121 0
Bacillus licheniformis ATCC 14580 (279010.5} 4222645 4302 1 256 1525 4196 93 0
Rubrivivax gelatinosus PM1 (279263.3} 4567120 4381 26 177 1261 4309 72 0
Staphylococcus haemolyticus JCSC1435 (279808.3} 2697861 2783 4 231 1039 2692 75 0
Leifsonia xyli subsp. xyli str. CTCB07 (281090.3} 2584158 2081 1 219 790 2030 48 0
Bacillus thuringiensis serovar konkukian str. 97-27 (281309.1} 5237682 5299 1 266 1411 5121 144 0
Haemophilus influenzae 86-028NP (281310.3} 1913428 1878 1 218 846 1791 77 0
Staphylococcus aureus subsp. aureus MRSA252 (282458.1} 2902619 2842 1 267 1184 2662 101 0
Staphylococcus aureus subsp. aureus MSSA476 (282459.1} 2820454 2794 2 267 1161 2608 104 0
Bartonella quintana str. Toulouse (283165.1} 1581384 1196 1 172 567 1142 49 0
Bartonella henselae str. Houston-1 (283166.1} 1931047 1548 1 172 594 1488 53 0
Idiomarina loihiensis L2TR (283942.3} 2839318 2702 1 222 1116 2628 68 0
Streptococcus pyogenes MGAS10394 (286636.1} 1899877 2027 1 229 826 1887 85 0
Bacillus cereus ZK (288681.3} 5300915 5293 1 255 1522 5137 135 0
Chromohalobacter salexigens DSM 3043 (290398.4} 3696649 3383 1 121 419 3299 84 0
Borrelia garinii PBi (290434.1} 986914 970 3 120 322 932 36 0
Gluconobacter oxydans 621H (290633.1} 2922384 2731 6 209 812 2667 62 0
Candidatus Blochmannia pennsylvanicus str. BPEN (291272.3} 791654 659 1 137 438 610 42 0
Xanthomonas oryzae pv. oryzae KACC10331 (291331.3} 4941439 4701 1 243 1195 4641 60 0
Silicibacter sp. TM1040 (292414.1} 4198271 3908 18 261 1299 3836 72 0
Thiobacillus denitrificans ATCC 25259 (292415.3} 2909809 2880 1 239 1228 2829 49 0
Symbiobacterium thermophilum IAM 14863 (292459.1} 3566135 3308 1 244 1089 3209 97 0
Wolbachia endosymbiont strain TRS of Brugia malayi (292805.3} 1080084 846 1 130 415 805 37 0
Streptococcus pyogenes MGAS5005 (293653.3} 1838554 2012 1 223 837 1865 85 0
Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150 (295319.3} 4585229 4209 1 288 1771 4098 104 0
Mycoplasma hyopneumoniae 232 (295358.3} 892758 727 1 99 276 693 33 0
Bacteroides fragilis YCH46 (295405.3} 5310990 4730 2 221 1008 4625 92 0
Polaromonas sp. JS666 (296591.1} 5894533 5597 39 258 1530 5597 0 0
Legionella pneumophila str. Lens (297245.3} 3405519 2992 2 206 919 2934 52 0
Legionella pneumophila str. Paris (297246.3} 3635495 3225 2 211 947 3166 52 0
Photobacterium profundum SS9 (298386.1} 6403280 5804 3 281 1907 5791 0 0
Streptococcus thermophilus CNRZ1066 (299768.3} 1796226 1951 1 218 811 1915 0 0
Shigella sonnei Ss046 (300269.3} 5039661 4600 2 293 1762 4468 119 0
Thermus thermophilus HB8 (300852.3} 2116056 2291 3 235 955 2238 53 0
Ehrlichia ruminantium str. Gardel (302409.3} 1499920 995 1 136 442 950 39 0
Campylobacter coli RM2228 (306254.1} 1860666 2017 38 216 857 1965 52 0
Campylobacter lari RM2100 (306263.1} 1562926 1640 7 203 778 1594 46 0
Campylobacter upsaliensis RM3195 (306264.1} 1773834 1978 20 215 810 1930 48 0
Corynebacterium jeikeium K411 (306537.3} 2462499 2201 1 205 762 2138 59 0
Salinibacter ruber DSM 13855 (309807.5} 3551823 2754 1 90 571 2708 46 0
Fugu rubripes (Fugu) (31033.3} 330398727 33003 5155 110 1119 33003 0 0
marine actinobacterium PHSC20C1 (312284.3} 2769012 2853 23 197 932 2803 50 0
Vibrio fischeri ES114 (312309.3} 4284050 3977 3 262 1494 3802 155 0
Janibacter sp. HTCC2649 (313589.3} 4228723 4429 14 221 1060 4380 49 0
Cellulophaga sp. MED134 (313590.3} 3301953 3028 17 179 733 2979 49 0
Flavobacterium sp. MED217 (313593.3} 4238065 3762 15 193 854 3720 42 0
Polaribacter irgensii 23-P (313594.3} 2745458 2518 7 182 710 2473 45 0
Robiginitalea biformata HTCC2501 (313596.3} 3534942 3368 7 182 816 3319 49 0
Tenacibaculum sp. MED152 (313598.3} 2967100 2701 2 178 718 2658 43 0
Flavobacteriales bacterium HTCC2170 (313603.3} 3877161 3665 15 185 864 3612 53 0
Erythrobacter litoralis HTCC2594 (314225.3} 3052801 3142 8 189 900 3097 45 0
Blastopirellula marina DSM 3645 (314230.3} 6653746 5687 64 194 1015 5625 62 0
Loktanella vestfoldensis SKA53 (314232.3} 3063691 3288 14 220 1052 3245 43 0
Nitrobacter sp. Nb-311A (314253.3} 4104352 4164 62 204 953 4113 51 0
Oceanicaulis alexandrii HTCC2633 (314254.3} 3168201 3291 15 192 913 3243 48 0
Parvularcula bermudensis HTCC2503 (314260.3} 2907267 2839 10 186 873 2794 45 0
Roseobacter sp. MED193 (314262.3} 4652716 4608 19 224 1324 4547 61 0
Roseovarius sp. 217 (314264.3} 4762632 4937 36 232 1397 4892 45 0
Sulfitobacter sp. NAS-14.1 (314267.3} 4002069 4220 27 220 1247 4165 55 0
Aurantimonas sp. SI85-9A1 (314269.3} 4325257 4521 35 206 1279 4462 59 0
Rhodobacterales bacterium HTCC2654 (314271.3} 4529231 4878 46 231 1377 4834 44 0
Alteromonas macleodii 'Deep ecotype' (314275.3} 4413342 4073 111 203 1233 4017 56 0
Idiomarina baltica OS145 (314276.3} 2722127 2686 70 197 938 2642 44 0
Nitrococcus mobilis Nb-231 (314278.3} 3617638 3834 43 200 1040 3786 48 0
Photobacterium profundum 3TCK (314280.3} 6107610 5702 82 221 1638 5523 179 0
Psychromonas sp. CNPT3 (314282.3} 2945265 2733 165 192 932 2632 101 0
Reinekea sp. MED297 (314283.3} 4506331 4383 61 210 1218 4320 63 0
gamma proteobacterium KT 71 (314285.3} 4328100 4355 32 198 1202 4307 48 0
Vibrio sp. MED222 (314290.3} 4891901 4415 99 262 1613 4299 116 0
Vibrio splendidus 12B01 (314291.3} 5596386 5026 118 250 1530 4931 95 0
Xanthomonas campestris pv. campestris str. 8004 (314565.3} 5148708 4334 1 253 1315 4273 60 0
Chlamydia trachomatis A/HAR-13 (315277.3} 1051969 964 2 117 326 920 41 0
Rickettsia felis URRWXCal2 (315456.3} 1587240 1555 3 154 470 1512 36 0
Rhodopseudomonas palustris BisB5 (316057.3} 4892717 4455 1 167 1251 4398 57 0
Xanthomonas campestris pv. vesicatoria str. 85-10 (316273.3} 5420152 4786 5 248 1254 4726 60 0
Synechococcus sp. CC9902 (316279.3} 2234828 2357 1 188 790 2304 51 0
Escherichia coli W3110 (316407.3} 4646332 4335 1 281 1793 4227 108 0
Thiomicrospira crunogena XCL-2 (317025.3} 2427734 2247 1 210 902 2192 52 0
Sphingopyxis alaskensis RB2256 (317655.9} 3345170 3062 1 95 718 3014 48 0
Shewanella denitrificans OS-217 (318161.3} 4446299 3814 83 238 1210 3723 91 0
Shewanella frigidimarina NCIMB 400 (318167.3} 4755640 4086 67 256 1390 4002 84 0
Shewanella putrefaciens CN-32 (319224.3} 4577697 4095 136 256 1397 3981 114 0
Pelodictyon luteolum DSM 273 (319225.3} 2364842 2139 1 202 846 2084 54 0
Clavibacter michiganensis (31964.1} 3405008 2944 5 217 775 2944 0 0
Streptococcus pyogenes MGAS6180 (319701.3} 1897573 2028 1 223 833 1894 83 0
Burkholderia pseudomallei 1710b (320372.3} 7308054 6421 2 267 1697 6348 72 0
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 (321314.4} 4944000 4786 3 308 1900 4670 107 0
Brevibacterium linens BL2 (321955.3} 4366969 3834 76 157 978 3779 55 0
Nitrobacter hamburgensis X14 (323097.3} 5011522 4384 4 118 477 4326 58 0
Nitrobacter winogradskyi Nb-255 (323098.3} 3402093 3179 1 220 921 3123 52 0
Methanospirillum hungatei JF-1 (323259.5} 3544738 3443 1 82 519 3378 65 0
Nitrosococcus oceani ATCC 19707 (323261.3} 3522111 3069 2 240 1111 3018 51 0
Shewanella sp. PV-4 (323850.3} 4474526 3814 100 242 1342 3706 108 0
Shewanella baltica OS155 (325240.3} 5012764 4420 197 251 1321 4334 86 0
Shewanella amazonensis SB2B (326297.3} 4234022 3670 79 248 1309 3579 91 0
Thiomicrospira denitrificans ATCC 33889 (326298.3} 2201561 2166 1 199 702 2097 56 0
Pseudoalteromonas haloplanktis TAC125 (326442.4} 3850272 3625 2 225 1063 3486 134 0
Sulfolobus acidocaldarius DSM 639 (330779.3} 2225959 2283 1 177 665 2223 51 0
Eremothecium gossypii (33169.1} 8764998 4948 8 104 577 4726 222 0
Nitrosomonas eutropha C71 (335283.3} 2711982 2587 50 163 847 2543 44 0
Psychrobacter cryohalolentis K5 (335284.3} 3101097 2571 2 167 888 2511 60 0
Syntrophobacter fumaroxidans MPOB (335543.6} 4990251 4280 1 97 848 4224 56 0
Candidatus Pelagibacter ubique HTCC1062 (335992.3} 1308759 1393 1 210 693 1354 35 0
Rickettsia bellii RML369-C (336407.4} 1522076 1466 1 65 212 1429 37 0
Pelobacter carbinolicus DSM 2380 (338963.3} 3665893 3179 1 143 905 3119 60 0
Rhodoferax ferrireducens DSM 15236 (338969.3} 4969784 4469 2 164 1243 4418 51 0
Methanosphaera stadtmanae DSM 3091 (339860.6} 1767403 1572 1 73 400 1522 50 0
Chlorobium chlorochromatii CaD3 (340177.8} 2572079 2120 1 84 479 2072 48 0
Magnetospirillum magneticum AMB-1 (342108.5} 4967148 4140 1 100 852 4084 56 0
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (342451.4} 2577899 2609 3 238 1009 2514 81 0
Pseudoalteromonas atlantica T6c (342610.3} 5094958 4296 84 177 1255 4231 65 0
Sodalis glossinidius str. 'morsitans' (343509.6} 4171146 5303 1 99 747 5214 89 0
Vibrio cholerae MO10 (345072.3} 4024286 3424 165 241 1433 3424 0 0
Vibrio cholerae O395 (345073.3} 4148680 3509 6 242 1434 3509 0 0
Natronomonas pharaonis DSM 2160 (348780.3} 2749696 2872 3 165 729 2822 49 0
Methanosaeta thermophila PT (349307.7} 1879471 1857 1 78 433 1805 52 0
Hahella chejuensis KCTC 2396 (349521.5} 7215267 6295 1 113 990 6213 82 0
Pseudomonas aeruginosa 2192 (350703.3} 6826253 6207 82 199 1846 6161 46 0
Geobacter uraniumreducens Rf4 (351605.3} 4882254 4228 189 165 1040 4187 41 0
Azotobacter vinelandii (354.1} 5422437 4723 104 281 1748 4659 64 0
Campylobacter jejuni subsp. jejuni 81-176 (354242.3} 1696276 1755 8 195 827 1755 0 0
Rickettsia sibirica (35793.1} 1250021 1330 1 151 455 1294 36 0
Staphylococcus aureus subsp. aureus JH9 (359786.3} 2862918 2730 56 221 1128 2673 57 0
Staphylococcus aureus subsp. aureus JH1 (359787.3} 2879577 2739 48 209 1070 2683 56 0
Bartonella bacilliformis KC583 (360095.3} 1456625 1275 35 130 483 1229 46 0
Campylobacter fetus subsp. fetus 82-40 (360106.3} 1733005 1721 8 188 744 1721 0 0
Campylobacter jejuni subsp. jejuni 260.94 (360108.3} 1657846 1761 10 198 832 1717 44 0
Campylobacter jejuni subsp. jejuni 84-25 (360110.3} 1671624 1793 5 196 837 1748 45 0
Campylobacter jejuni subsp. jejuni CF93-6 (360111.3} 1676304 1802 13 195 834 1757 45 0
Campylobacter jejuni subsp. jejuni HB93-13 (360112.3} 1694788 1711 8 198 836 1711 0 0
Haloquadratum walsbyi DSM 16790 (362976.6} 3132494 2771 1 85 540 2721 50 0
Plasmodium falciparum 3D7 (36329.1} 22820308 5291 14 108 421 5267 24 0
Staphylococcus aureus subsp. aureus USA300 (367830.3} 2917469 2767 4 223 1099 2604 69 0
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis (36870.1} 703004 680 2 144 477 638 40 0
Burkholderia xenovorans LB400 (36873.1} 9660904 8738 48 292 2659 8738 0 0
Arabidopsis thaliana (3702.1} 122429606 28897 282 177 1890 28193 704 0
Streptococcus pyogenes MGAS9429 (370551.3} 1836467 2029 1 197 799 1877 85 0
Streptococcus pyogenes MGAS10270 (370552.3} 1928252 2116 1 198 818 1987 81 0
Streptococcus pyogenes MGAS2096 (370553.3} 1860355 2042 1 199 841 1898 81 0
Streptococcus pyogenes MGAS10750 (370554.3} 1937111 2109 1 201 817 1979 81 0
Roseobacter denitrificans OCh 114 (375451.6} 4133097 3982 1 99 807 3941 41 0
Helicobacter acinonychis str. Sheeba (382638.8} 1553927 1770 1 71 333 1730 40 0
Pseudomonas entomophila L48 (384676.6} 5888780 4900 1 107 1099 4800 100 0
Listeria welshimeri serovar 6b str. SLCC5334 (386043.6} 2814130 2788 1 89 570 2704 84 0
Lactobacillus brevis ATCC 367 (387344.8} 2291220 2261 1 75 366 2181 80 0
Listeria monocytogenes FSL J1-194 (393117.3} 2986227 3745 44 168 1186 3692 53 0
Listeria monocytogenes FSL J2-071 (393121.3} 3149923 3414 75 168 1003 3370 44 0
Listeria monocytogenes FSL N1-017 (393123.3} 2857865 3743 45 164 1195 3704 39 0
Listeria monocytogenes FSL N3-165 (393124.3} 2886689 2916 33 170 960 2881 35 0
Listeria monocytogenes FSL R2-503 (393125.3} 3001696 4812 52 167 1580 4766 46 0
Listeria monocytogenes F6900 (393128.3} 2958319 3289 33 170 1074 3262 27 0
Listeria monocytogenes J0161 (393130.3} 3051828 3207 48 170 998 3179 28 0
Listeria monocytogenes J2818 (393131.3} 2971223 3221 35 171 1025 3176 45 0
Listeria monocytogenes 10403S (393133.3} 2866709 2896 30 170 946 2871 25 0
Alcanivorax borkumensis SK2 (393595.12} 3120143 2814 1 98 698 2763 51 0
Maricaulis maris MCS10 (394221.5} 3368780 3055 1 90 650 3004 51 0
Oryza sativa (japonica cultivar-group) (39947.1} 98171731 14524 751 124 435 14399 125 0
Listeria monocytogenes Aureli 1997 (401650.3} 3006068 3268 74 165 982 3219 49 0
Stenotrophomonas maltophilia K279a (40324.1} 4839721 4475 11 256 1349 4396 79 0
Neisseria lactamica ST-640 (486.1} 2181714 2488 81 213 812 2440 48 0
Neisseria meningitidis FAM18 (487.2} 2236675 2505 43 216 860 2436 69 0
Novosphingobium aromaticivorans (48935.1} 4418197 4155 208 240 1326 4098 57 0
Schizosaccharomyces pombe (4896.1} 12515113 5231 4 148 783 5011 220 0
Saccharomyces cerevisiae (baker's yeast) (4932.3} 12161485 6680 21 151 795 6680 0 0
Neurospora crassa (5141.1} 38070064 10085 134 140 686 10085 0 0
Bordetella avium (521.1} 3727224 3523 10