2-Ketogluconate Utilization
2-phosphoglycolate salvage
4-Hydroxyphenylacetic acid catabolic pathway
ABC transporter Iron (II) and Manganese
ABC transporter L-proline glycine betaine (TC 3.A.1.12.1)
ABC transporter alkylphosphonate (TC 3.A.1.9.1)
ABC transporter arabinose (TC 3.A.1.2.2)
ABC transporter branched-chain amino acid (TC 3.A.1.4.1)
ABC transporter dipeptide (TC 3.A.1.5.2)
ABC transporter ferric enterobactin (TC 3.A.1.14.2)
ABC transporter ferrichrome (TC 3.A.1.14.3)
ABC transporter galactose (TC 3.A.1.2.3)
ABC transporter glutamate aspartate (TC 3.A.1.3.4)
ABC transporter glutamine (TC 3.A.1.3.2)
ABC transporter glycerol (TC 3.A.1.1.3)
ABC transporter histidine lysine arginine ornithine (TC 3.A.1.3.1)
ABC transporter iron(III) dicitrate (TC 3.A.1.14.1)
ABC transporter macrolide
ABC transporter maltose
ABC transporter molybdenum (TC 3.A.1.8.1)
ABC transporter nickel (TC 3.A.1.5.3)
ABC transporter of unknown substrate X
ABC transporter oligopeptide (TC 3.A.1.5.1)
ABC transporter peptide (TC 3.A.1.5.5)
ABC transporter phosphate (TC 3.A.1.7.1)
ABC transporter ribose (TC 3.A.1.2.1)
ABC transporter tungstate (TC 3.A.1.6.2)
ATP-dependent Nuclease
Acetoin, butanediol metabolism
Acetophenone carboxylase
Acetyl-CoA fermentation to Butyrate
Acriflavin resistance cluster
Adhesins in Staphylococcus
Adhesion of Campylobacter
Aerobactin siderophore biosynthesis
Alanine biosynthesis
Alginate metabolism
Alkanesulfonate assimilation
Alkanesulfonates Utilization
Alkylphosphonate utilization
Allantoin degradation
Aminoglycoside adenylyltransferases
Ammonia assimilation
Anaerobic respiratory reductases
Anthracycline biosynthesis
Archaeal lipids
Archease
Arginine Biosynthesis
Arginine Biosynthesis extended
Arginine Deiminase Pathway
Aromatic Amin Catabolism
Aromatic amino acid degradation
Aromatic amino acid interconversions with aryl acids
Arsenic resistance
Asp-tRNA(Asn) transamidation
Bacterial Cell Division
Bacterial Chemotaxis
Bacterial Cytoskeleton
Bacterial RNA-metabolizing Zn-dependent hydrolases
Bacterial hemoglobins
Bacterial light-harvesting proteins
Bacteriocin-like peptides Blp
Benzoate degradation
Beta-Glucoside Metabolism
Beta-lactamase
Betaine Biosynthesis and Uptake
Betaine biosynthesis
Betaine biosynthesis from glycine
Biofilm formation in Staphylococcus
Biogenesis of c-type cytochromes
Biogenesis of cbb3-type cytochrome c oxidases
Biogenesis of cytochrome c oxidases
Biotin biosynthesis
Biphenyl Degradation
Branched-Chain Amino Acid Biosynthesis
Butanol Biosynthesis
CMP-N-acetylneuraminate Biosynthesis
CRISPRs
Calvin-Benson cycle
Campylobacter Iron Metabolism
Capsular Polysaccharide Biosynthesis in Vibrio
Capsular heptose biosynthesis
Capsular surface virulence antigen loci
Carbon monoxide dehydrogenases
Carotenoids
Catechol branch of beta-ketoadipate pathway
Central meta-cleavage pathway of aromatic compound degradation
Chitin and N-acetylglucosamine utilization
Chloroaromatic degradation pathway
Chlorophyll Biosynthesis
Chlorosome
Cholera toxin
Choline Transport
Chorismate Synthesis
Clavulanic acid biosynthesis
Coagulation cascade
Cobalamin synthesis
Cobalt-zinc-cadmium resistance
Coenzyme A Biosynthesis
Coenzyme B12 biosynthesis
Coenzyme F420-H2 dehydrogenase (methanophenazine)
Coenzyme F420 hydrogenase
Coenzyme F420 synthesis
Coenzyme PQQ synthesis
Colanic acid biosynthesis
Conserved gene cluster associated with Met-tRNA formyltransferase
Conserved gene cluster possibly involved in RNA metabolism
Copper homeostasis
Copper homeostasis: copper tolerance
Curli production
Cyanate hydrolysis
Cyanobacterial Circadian Clock
Cysteinyl-tRNA(Cys) synthesis, archaeal
CytR regulation
Cytochrome B6-F complex
Cytolethal distending toxin of Campylobacter jejuni
Cytolysin and Lipase operon in Vibrio
D-Sorbitol(D-Glucitol) and L-Sorbose Utilization
D-Tagatose and Galactitol Utilization
D-alanyl lipoteichoic acid Biosynthesis
D-galactarate, D-glucarate and D-glycerate catabolism
D-galactonate catabolism
D-galacturonate degradation
D-tyrosyl-tRNA(Tyr) deacylase
DNA-replication
DNA repair, UvrABC system
DNA repair, bacterial
DNA repair, bacterial RecFOR pathway
DNA repair and recombination eukaryotic
DNA replication, archaeal
DNA structural proteins, bacterial
DNA topoisomerases, Type I, ATP-independent
DNA topoisomerases, Type II, ATP-dependent
De Novo Purine Biosynthesis
De Novo Pyrimidine Synthesis
Denitrification
Di-Inositol-Phosphate biosynthesis
Dihydroxyacetone kinases
Dissimilatory nitrite reductase
ESAT-6 proteins secretion system in Actinobacteria
ESAT-6 proteins secretion system in Firmicutes
Embden-Meyerhof and Gluconeogenesis
Embden-Meyerhof and Gluconeogenesis Archaeal
Energy-conserving hydrogenase (ferredoxin)
Energy conserving hydrogenase, Methanococcales-Methanobacteriales-Methanopyrales
Entner-Doudoroff Pathway
Erythritol utilization
Ethanolamine utilization
F0F1-type ATP synthase
FMN and FAD biosynthesis
Fatty Acid Biosynthesis FASII
Fe-S cluster assembly
Fermentations: Lactate
Fermentations: Mixed acid
Flagellum
Flagellum in Campylobacter
Flavocytochrome C
Flavodoxin
Flavohaemoglobin
Folate Biosynthesis
Formaldehyde assimilation: Ribulose monophosphate pathway
Formate dehydrogenase
Formate hydrogenase
Fructooligosaccharides(FOS) and Raffinose Utilization
Fructose utilization
Galactitol degradation
Galactose degradation
General secretory pathway (Sec-SRP) complex (TC 3.A.5.1.1)
Glu-tRNA(Gln) transamidation
Glutamate, aspartate and asparagine biosynthesis
Glutamate biosynthesis
Glutamine synthetases
Glutathione-regulated potassium-efflux system and associated functions
Glycerol and Glycerol-3-phosphate Uptake and Utilization
Glycerol fermenation to 1,3-propanediol
Glycerolipid and glycerophospholipid metabolism
Glycine Biosynthesis
Glycine and Serine Utilization
Glycine cleavage system
Glycine reductase, sarcosine reductase and betaine reductase
Glycogen metabolism
Glycolate, glyoxylate interconversions
Glyoxylate Synthesis
Glyoxylate bypass
GroEL GroES
Group II intron-associated genes
H2:CoM-S-S-HTP oxidoreductase
HMG CoA Synthesis
Heme, hemin uptake and utilization systems in GramPositives
Heme-bound Iron Scavenge Pathway
Heme biosynthesis orphans
Hemin transport system
Hexitol degradation
Hfl operon
Histidine Biosynthesis
Histidine Degradation
Homogentisate pathway of aromatic compound degradation
Hydantoin metabolism
Hydrogenases
Hyperosmotic ectoine biosynthesis
Inositol catabolism
Inteins
Intercellular adhesion SA
Isoleucine degradation
Isoprenoid Biosynthesis
KDO2-Lipid A biosynthesis
Ketoisovalerate oxidoreductase
L-Arabinose utilization
L-ascorbate utilization (and related gene clusters)
L-fucose utilization
L-rhamnose utilization
LMPTP YfkJ cluster
LMPTP YwlE cluster
LOS core oligosaccharide biosynthesis
Lactate utilization
Lactose utilization
Leucine Biosynthesis
Leucine Degradation and HMG-CoA Metabolism
Lipid A-Ara4N pathway ( Polymyxin resistance )
Lipid A modifications
Lipoic acid metabolism
Listeria Pathogenicity Island LIPI-1 extended
Listeria phi-A118-like prophages
Listeria surface proteins: Internalin-like proteins
Listeria surface proteins: LPXTG motif
Luciferases
Lysine Biosynthesis DAP Pathway
Lysine degradation
MLST
Malonate decarboxylase
Maltose and Maltodextrin Utilization
Mannitol Utilization
Mannose-sensitive hemagglutinin type 4 pilus
Mannose Metabolism
Membrane-bound Ni, Fe-hydrogenase
Menaquinone and Phylloquinone Biosynthesis
Mercuric reductase
Mercury resistance operon
Methanogenesis
Methanogenesis from methylated compounds
Methanophenazine hydrogenase
Methicillin resistance in Staphylococci
Methionine Biosynthesis
Methionine Salvage
Methylcitrate cycle
Methylglyoxal Metabolism
Molybdopterin biosynthesis
Motility of Campylobacter
MukBEF Chromosome Condensation
Multidrug Resistance, 2-protein version Found in Gram-positive bacteria
Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
N-Acetyl-Galactosamine and Galactosamine Utilization
N-acetylmuramoyl-L-alanine amidase
N-heterocyclic aromatic compound degradation
N-linked Glycosylation in Bacteria
NAD and NADP cofactor biosynthesis global
Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
Na+ translocating decarboxylases and related biotin-dependent enzymes
NiFe hydrogenase maturation
Nitrate and nitrite ammonification
Nitrogen fixation
Nitrosative stress
Nudix proteins (nucleoside triphosphate hydrolases)
NusA-TFII Cluster
One-carbon metabolism by tetrahydropterines
Osmotically activated L-carnitine ABC transporter in Listeria
Oxidative stress
P-type ATPase transporter potassium (TC 3.A.3.7.1)
PA0057 cluster
Pentose phosphate pathway
Peptidoglycan Biosynthesis
Peptidyl-prolyl cis-trans isomerase
Periplasmic disulfide interchange
Phage shock protein (psp) operon
Phenylacetate pathway of aromatic compound degradation
Phenylalanine synthesis
Phenylpropanoid compound degradation
Phenylpropionate Degradation
Phosphate metabolism
Phosphonate metabolism
Phosphorylcholine incorporation in LPS
Photorespiration (oxidative C2 cycle)
Photosystem I
Photosystem I-type photosynthetic reaction center
Photosystem II
Photosystem II-type photosynthetic reaction center
Plasmid replication
PnuC-like transporters
Polyadenylation bacterial
Polyamine Metabolism
Polyhydroxybutyrate metabolism
Porphyrin, Heme, and Siroheme Biosynthesis
Potassium homeostasis
Proline Synthesis
Proline reductase
Propanediol utilization
Prophage-encoded Exotoxins
Propionate-CoA to Succinate Module
Proteasome archaeal
Proteasome eukaryotic
Protein chaperones
Protein degradation
Proteolysis in bacteria, ATP-dependent
Protocatechuate branch of beta-ketoadipate pathway
Pterin biosynthesis
Purine Utilization
Purine conversions
Purine nucleotide synthesis regulator
Putative hemin transporter
Putative sulfate assimilation cluster
Pyoverdine biosynthesis
Pyridoxin (Vitamin B6) Biosynthesis
Pyrimidine utilization
Pyrroloquinoline Quinone biosynthesis
Pyruvate:ferredoxin oxidoreductase
Pyruvate Alanine Serine Interconversions
Pyruvate metabolism I: anaplerotic reactions, PEP
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
Queuosine-Archaeosine Biosynthesis
Quinate degradation
Quorum Sensing: Autoinducer-2 Synthesis
RNA 3'-terminal phosphate cyclase
RNA polymerase I
RNA polymerase II
RNA polymerase III
RNA polymerase III initiation factors
RNA polymerase II initiation factors
RNA polymerase archaeal
RNA polymerase archaeal initiation factors
RNA polymerase bacterial
RNA polymerase chloroplast
RNA processing and degradation, bacterial
RelBE bacterial toxin-antitoxin system
Resistance to Vancomycin
Resistance to fluoroquinolones
Respiratory Complex I
Respiratory dehydrogenases 1
Rhamnose containing glycans
Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization
Riboflavin metabolism
Ribonuclease H
Ribonuclease P archaeal and eukaryal
Ribonucleotide reduction
Ribose and deoxyribose phosphate metabolism
Ribosome LSU bacterial
Ribosome LSU chloroplast
Ribosome LSU eukaryotic and archaeal
Ribosome LSU mitochondrial
Ribosome SSU bacterial
Ribosome SSU chloroplast
Ribosome SSU eukaryotic and archaeal
Ribosome SSU mitochondrial
Ribosome biogenesis bacterial
Rrf2 family transcriptional regulators
Rubrerythrin
Salicylate and gentisate catabolism
Salicylate ester degradation
Selenocysteine metabolism
Serine-glyoxylate cycle
Serine Biosynthesis
Serotype determining Capsular polysaccharide biosynthesis in Staphylococcus
Sialic Acid Metabolism
Siderophore biosynthesis in Staphylococci
Siderophore enterobactin biosynthesis
Siderophore enterobactin biosynthesis and ferric enterbactin transport
SigmaB stress responce regulation
Signal peptidase
Sodium Hydrogen Antiporter
Soluble cytochromes and functionally related electron carriers
SpeB-SpeF extended regulon
Spliceosome
Spore Coat
Staphylococcal pathogenicity islands SaPI
Staphylococcal phi-Mu50B-like prophages
Streptococcal Mga Regulon
Streptococcus pneumoniae Vancomycin Tolerance Locus
Streptococcus pyogenes Virulome
Streptococcus pyogenes recombinatorial zone
Streptolysin S Biosynthesis and Transport
Streptomycin biosynthesis
Streptothricin resistance
Succinate dehydrogenase
Sucrose Metabolism
Sucrose utilization Shewanella
Sugar-phosphate stress regulation
Sulfate assimilation
TCA Cycle
Taurine Utilization
Teichoic and lipoteichoic acids biosynthesis
Teichuronic acid biosynthesis
Terminal cytochrome C oxidases
Terminal cytochrome oxidases
Tetracycline resistance, ribosome protection type
Tetrathionate respiration
Thermosome, archaeal
Thiamin biosynthesis
Thioredoxin-disulfide reductase
Threonine anaerobic catabolism gene cluster
Threonine and Homoserine Biosynthesis
Threonine degradation
Tn552
Ton and Tol transport systems
Transcription factors bacterial
Transcription factors cyanobacterial RpoD-like sigma factors
Transcription initiation, bacterial sigma factors
Translation elongation factors eukaryotic and archaeal
Translation factors bacterial
Translation initiation factors eukaryotic and archaeal
Transport of Iron
Transport of Manganese
Transport of Molybdenum
Transport of Nickel and Cobalt
Transport of Zinc
Trehalose Biosynthesis
Trehalose Uptake and Utilization
Triacylglycerol metabolism
Tricarballylate Utilization
Tryptophan synthesis
Twin-arginine translocation system
Two-component regulatory systems in Campylobacter
Two cell division clusters relating to chromosome partitioning
Type 4 conjugative transfer system, IncI1 type
Type 4 secretion and conjugative transfer
Type III secretion system orphans
Tyrosine synthesis
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
Ubiquinone Biosynthesis
Ubiquinone Menaquinone-cytochrome c reductase complexes
Universal GTPases
Urea decomposition
Utilization of glutathione as a sulphur source
V-Type ATP synthase
Valine degradation
Vibrio pathogenicity island
Widespread colonization island
Wyeosine-MimG Biosynthesis
Xylose utilization
YbbK
YcfH
YgjD and YeaZ
YjeE
Zinc resistance
cAMP signaling in bacteria
carnitine metabolism
dTDP-rhamnose synthesis
fatty acid metabolism
fatty acid oxidation pathway
n-Phenylalkanoic acid degradation
p-Hydroxybenzoate degradation
polyisoprenoid biosynthesis
ppGpp biosynthesis
tRNA aminoacylase paralogs
tRNA aminoacylation
tRNA aminoacylation, mitochondrial
tRNA nucleotidyltransferase
tRNA processing
tRNA splicing
trimethylamine N-oxide (TMAO) reductase
yrdC