,------- Aeropyrum pernix K1 (272557.1) | ,-------| | | ,------- Sulfolobus acidocaldarius DSM 639 (330779.3) | |-------| | | |------- Sulfolobus solfataricus P2 (273057.1) | | | | | `------- Sulfolobus tokodaii str. 7 (273063.1) | | | | | `------- Pyrobaculum aerophilum str. IM2 (178306.1) | ,-------| Archaea | | | | ,------- Archaeoglobus fulgidus DSM 4304 (224325.1) | | | | | | | |-------| Euryarchaeota | | | | | | ,------- Haloarcula marismortui ATCC 43049 (272569.1) | | |-------| | | | |------- Halobacterium sp. NRC-1 (64091.1) | | | | | | | `------- Natronomonas pharaonis DSM 2160 (348780.3) | | | | | | | | |------- Methanothermobacter thermautotrophicus str. Delta H (187420.1) | | | | | | | | | ,------- Methanocaldococcus jannaschii DSM 2661 (243232.1) | | |-------| | | | `------- Methanococcus maripaludis S2 (267377.1) | | | | | | | | | ,------- Methanococcoides burtonii DSM 6242 (259564.1) | | | | | | |-------| ,------- Methanosarcina acetivorans C2A (188937.1) | | | `-------| | | | |------- Methanosarcina barkeri str. fusaro (269797.3) | | | | | | | `------- Methanosarcina mazei Go1 (192952.1) | | | | | |------- Methanopyrus kandleri AV19 (190192.1) | | | | | | ,------- Pyrococcus abyssi GE5 (272844.1) | | | ,-------| | | | | |------- Pyrococcus furiosus DSM 3638 (186497.1) | | | | | | | | | `------- Pyrococcus horikoshii OT3 (70601.1) | | |-------| | | | `------- Thermococcus kodakaraensis (69014.3) | | | | | | | | | ,------- Ferroplasma acidarmanus (97393.1) | | `-------| | | |------- Picrophilus torridus DSM 9790 (263820.1) | | | | | | ,------- Thermoplasma acidophilum DSM 1728 (273075.1) | | `-------| | | `------- Thermoplasma volcanium GSS1 (273116.1) | | | | | `------- Nanoarchaeum equitans Kin4-M (228908.1) | -------| All | | | ,------- Corynebacterium diphtheriae NCTC 13129 (257309.1) | ,-------| | | |------- Corynebacterium efficiens YS-314 (196164.1) | | | | | | ,------- Corynebacterium glutamicum ATCC 13032 (196627.3) | | |-------| | | | `------- Corynebacterium glutamicum ATCC 13032 (196627.4) | | | | | `------- Corynebacterium jeikeium K411 (306537.3) | | | ,-------| Corynebacterineae | | | | | | ,------- Mycobacterium avium subsp. paratuberculosis str. k10 (262316.1) | | |-------| | | | |------- Mycobacterium leprae TN (272631.1) | | | | | | | |------- Mycobacterium marinum M (216594.1) | | | | | | | |------- Mycobacterium smegmatis str. MC2 155 (246196.1) | | | | | | | | | | | | ,------- Mycobacterium bovis AF2122/97 (233413.1) | | | `-------| | | | |------- Mycobacterium microti OV254 (1806.1) | | | | | | | |------- Mycobacterium tuberculosis CDC1551 (83331.1) | | | | | | | `------- Mycobacterium tuberculosis H37Rv (83332.1) | | | | | | | | `------- Nocardia farcinica IFM 10152 (247156.1) | | | | | ,-------| Actinomycetales | | | | | | | | |------- Kineococcus radiotolerans SRS30216 (266940.1) | | | | | | | | | ,------- Brevibacterium linens BL2 (321955.3) | | | | | | | | ,------- Tropheryma whipplei TW08/27 (218496.1) | | | |-------| | | | | `------- Tropheryma whipplei str. Twist (203267.1) | | |-------| | | | | | | | |------- Janibacter sp. HTCC2649 (313589.3) | | | | | | | | | | | | ,------- Clavibacter michiganensis (31964.1) | | | `-------| | | | `------- Leifsonia xyli subsp. xyli str. CTCB07 (281090.3) | | | | | | | | |------- Propionibacterium acnes KPA171202 (267747.1) | | | | | | | | | ,------- Streptomyces avermitilis MA-4680 (227882.1) | | |-------| | | | `------- Streptomyces coelicolor A3(2) (100226.1) | | | | | | | | `------- Thermobifida fusca YX (269800.4) | | | | | ,-------| Actinobacteridae | | | | | | | | | ,------- Bifidobacterium adolescentis (1680.3) | | `-------| | | |------- Bifidobacterium longum DJO10A (205913.1) | | | | | `------- Bifidobacterium longum NCC2705 (206672.1) | | | | | ,-------| Actinobacteria | | | | | | | | |------- Rubrobacter xylanophilus DSM 9941 (266117.1) | | | | | |------- Symbiobacterium thermophilum IAM 14863 (292459.1) | | | | | `------- marine actinobacterium PHSC20C1 (312284.3) | | | | |-------| Bacteria | | | | | |------- Aquifex aeolicus VF5 (224324.1) | | | | | | ,------- Bacteroides fragilis ATCC 25285 (272559.3) | | | | | |------- Bacteroides fragilis YCH46 (295405.3) | | ,-------| | | | | ,------- Bacteroides fragilis 638R (817.1) | | | |-------| | | | | `------- Bacteroides fragilis NCTC9343 (817.2) | | | | | | | `------- Bacteroides thetaiotaomicron VPI-5482 (226186.1) | | ,-------| | | | | | | | `------- Porphyromonas gingivalis W83 (242619.1) | | | | | | | |-------| Bacteroidetes | | | | | | | | | | | | | | | ,------- Flavobacteria sp. BBFL7 (156586.3) | | |-------| | | | | ,------- Cellulophaga sp. MED134 (313590.3) | | | | ,-------| | | | | | |------- Croceibacter atlanticus HTCC2559 (216432.3) | | | | | | | | | | | |------- Flavobacterium sp. MED217 (313593.3) | | | | | | | | | | | |------- Polaribacter irgensii 23-P (313594.3) | | | | | | | | | | | |------- Robiginitalea biformata HTCC2501 (313596.3) | | | | | | | | | | | `------- Tenacibaculum sp. MED152 (313598.3) | | | `-------| | | | `------- Flavobacteriales bacterium HTCC2170 (313603.3) | | | | | `------- Cytophaga hutchinsonii (985.1) | | | | | | ,------- Chlamydia muridarum Nigg (243161.4) | | ,-------| | | | |------- Chlamydia trachomatis A/HAR-13 (315277.3) | | | | | | | `------- Chlamydia trachomatis D/UW-3/CX (272561.1) | | | | | | | | ,-------| Chlamydiaceae | | | | | | | | | | | | ,------- Chlamydophila abortus (83555.1) | | | `-------| | | | |------- Chlamydophila abortus S26/3 (218497.4) | | | | | | | |------- Chlamydophila caviae GPIC (227941.1) | | | | | | | |------- Chlamydophila pneumoniae AR39 (115711.1) | | | | | | | |------- Chlamydophila pneumoniae CWL029 (115713.1) | | | | | | | |------- Chlamydophila pneumoniae J138 (138677.1) | | | | | | | `------- Chlamydophila pneumoniae TW-183 (182082.1) | | | | |-------| Chlamydiae | | | | | | | | `------- Parachlamydia sp. UWE25 (264201.1) | | | | | | ,------- Chlorobium tepidum TLS (194439.1) | |-------| | | `------- Pelodictyon luteolum DSM 273 (319225.3) | | | | | | ,------- Dehalococcoides ethenogenes 195 (243164.3) | |-------| | | `------- Dehalococcoides sp. CBDB1 (255470.3) | | | | ,------- Synechococcus elongatus PCC 6301 (269084.3) | | | | | |------- Synechococcus elongatus PCC 7942 (1140.3) | | ,-------| | | | |------- Synechococcus sp. CC9605 (110662.3) | | | | | | | |------- Synechococcus sp. CC9902 (316279.3) | | | | | | | |------- Synechococcus sp. WH 8102 (84588.1) | | | | | | | |------- Synechococcus sp. WH 7805 (59931.3) | | | | | | | |------- Synechococcus sp. WH 5701 (69042.3) | | | | | | | `------- Synechococcus sp. RS9917 (221360.3) | | | | | | | | ,-------| Chroococcales | | | | | | | | | | | |------- Synechocystis sp. PCC 6803 (1148.1) | | | | | | | `------- Thermosynechococcus elongatus BP-1 (197221.1) | | | | | | | |-------| Cyanobacteria | | | | | | | | |------- Gloeobacter violaceus PCC 7421 (251221.1) | | | | | | | | | ,------- Anabaena variabilis ATCC 29413 (240292.3) | | |-------| | | | | ,------- Nostoc punctiforme PCC 73102 (63737.1) | | | `-------| | | | `------- Nostoc sp. PCC 7120 (103690.1) | | | | | | | | |------- Trichodesmium erythraeum IMS101 (203124.1) | | | | | | | | | ,------- Prochlorococcus marinus str. MIT 9211 (93059.3) | | `-------| | | |------- Prochlorococcus marinus str. MIT 9312 (74546.3) | | | | | |------- Prochlorococcus marinus str. MIT 9313 (74547.1) | | | | | |------- Prochlorococcus marinus str. NATL2A (59920.3) | | | | | |------- Prochlorococcus marinus subsp. marinus str. CCMP1375 (167539.1) | | | | | `------- Prochlorococcus marinus subsp. pastoris str. CCMP1986 (59919.1) | | | | | | ,------- Deinococcus geothermalis DSM11300 (68909.1) | | ,-------| | | | `------- Deinococcus radiodurans R1 (243230.1) | | | | |-------| | | | ,------- Thermus thermophilus HB27 (262724.1) | | `-------| | | `------- Thermus thermophilus HB8 (300852.3) | | | | | | ,------- Bacillus anthracis str. 'Ames Ancestor' (261594.1) | | ,-------| | | | |------- Bacillus anthracis str. Ames (198094.1) | | | | | | | |------- Bacillus anthracis str. Sterne (260799.1) | | | | | | | |------- Bacillus cereus ATCC 10987 (222523.1) | | | | | | | |------- Bacillus cereus ATCC 14579 (226900.1) | | | | | | | |------- Bacillus cereus ZK (288681.3) | | | | | | | |------- Bacillus cereus G9241 (269801.1) | | | | | | | `------- Bacillus thuringiensis serovar konkukian str. 97-27 (281309.1) | | | | | | | | ,-------| Bacillus | | | | | | | | | | | |------- Bacillus clausii KSM-K16 (66692.3) | | | | | | | |------- Bacillus halodurans C-125 (272558.1) | | | | | | | |------- Bacillus licheniformis ATCC 14580 (279010.5) | | | | | | | |------- Bacillus B-14905 (101031.3) | | | | | | | `------- Bacillus subtilis subsp. subtilis str. 168 (224308.1) | | | | | | | | ,-------| Bacillaceae | | | | | | | | | | | |------- Exiguobacterium sp. 255-15 (262543.1) | | | | | | | |------- Geobacillus kaustophilus HTA426 (235909.3) | | | | | | | `------- Oceanobacillus iheyensis HTE831 (221109.1) | | | | | | | | ,-------| Bacillales | | | | | | | | | | | | ,------- Listeria innocua Clip11262 (272626.1) | | | | | | | | | | | | | |-------| Listeriaceae | | | | | | | | | | | | | | |------- Listeria monocytogenes 10403S (393133.3) | | | | | | | | | |------- Listeria monocytogenes Aureli 1997 (401650.3) | | | | | | | | | |------- Listeria monocytogenes EGD-e (169963.1) | | | | | | | | | |------- Listeria monocytogenes F6900 (393128.3) | | | | | | | | | |------- Listeria monocytogenes FSL J1-194 (393117.3) | | | | | | | | | |------- Listeria monocytogenes FSL J2-071 (393121.3) | | | | | | | | | |------- Listeria monocytogenes FSL N1-017 (393123.3) | | | | | | | | | |------- Listeria monocytogenes FSL N3-165 (393124.3) | | | | | | | | | |------- Listeria monocytogenes FSL R2-503 (393125.3) | | | | | | | | | |------- Listeria monocytogenes J0161 (393130.3) | | | | | | | | | |------- Listeria monocytogenes J2818 (393131.3) | | | | | | | | | |------- Listeria monocytogenes str. 1/2a F6854 (267409.1) | | | | | | | | | |------- Listeria monocytogenes str. 4b F2365 (265669.1) | | | | | | | | | `------- Listeria monocytogenes str. 4b H7858 (267410.1) | | | | | | | | | | | | ,------- Staphylococcus aureus RF122 (273036.3) | | | | | | | | `-------| Staphylococcaceae | | | | | | | |------- Staphylococcus aureus subsp. aureus COL (93062.4) | | | | | | | |------- Staphylococcus aureus subsp. aureus JH1 (359787.3) | | | | | | | |------- Staphylococcus aureus subsp. aureus JH9 (359786.3) | | | | | | | |------- Staphylococcus aureus subsp. aureus MRSA252 (282458.1) | | | | | | | |------- Staphylococcus aureus subsp. aureus MSSA476 (282459.1) | | | | | | | |------- Staphylococcus aureus subsp. aureus MW2 (196620.1) | | | | | | | |------- Staphylococcus aureus subsp. aureus Mu50 (158878.1) | | | | | | | |------- Staphylococcus aureus subsp. aureus N315 (158879.1) | | | | | | | |------- Staphylococcus aureus subsp. aureus NCTC 8325 (93061.3) | | | | | | | |------- Staphylococcus aureus subsp. aureus USA300 (367830.3) | | | | | | | |------- Staphylococcus epidermidis ATCC 12228 (176280.1) | | | | | | | |------- Staphylococcus epidermidis RP62A (176279.3) | | | | | | | |------- Staphylococcus haemolyticus JCSC1435 (279808.3) | | | | | | | `------- Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (342451.4) | | | | | | | |-------| Firmicutes | | | | | | | | | | | | | | | ,------- Clostridium acetobutylicum ATCC 824 (272562.1) | | | ,-------| | | | | |------- Clostridium botulinum ATCC 3502 (1491.1) | | | | | | | | | |------- Clostridium difficile 630 (1496.1) | | | | | | | | | |------- Clostridium perfringens str. 13 (195102.1) | | | | | | | | | |------- Clostridium tetani E88 (212717.1) | | | | | | | | | `------- Clostridium thermocellum ATCC 27405 (203119.1) | | | | | | | ,-------| | | | | | | | | | | ,------- Carboxydothermus hydrogenoformans Z-2901 (246194.3) | | | | `-------| | | | | `------- Desulfitobacterium sp. Y51 (138119.3) | | |-------| | | | | | | | | ,------- Moorella thermoacetica ATCC 39073 (264732.1) | | | `-------| | | | `------- Thermoanaerobacter tengcongensis MB4 (273068.3) | | | | | | | | | ,------- Enterococcus faecalis V583 (226185.1) | | | | | | |-------| Lactobacillales | | | | | | | | ,------- Lactobacillus acidophilus NCFM (272621.3) | | | | ,-------| | | | | | |------- Lactobacillus gasseri (1596.1) | | | | | | | | | | | |------- Lactobacillus johnsonii NCC 533 (257314.1) | | | | | | | | | | | `------- Lactobacillus plantarum WCFS1 (220668.1) | | | |-------| | | | | | | | | | | ,------- Pediococcus damnosus (51663.3) | | | | `-------| | | | | `------- Pediococcus pentosaceus (1255.1) | | | | | | | |------- Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (203120.1) | | | | | | | |------- Oenococcus oeni PSU-1 (203123.1) | | | | | | | | ,------- Lactococcus lactis subsp. lactis Il1403 (272623.1) | | | | | | | | `-------| Streptococcaceae | | | | | | | | ,------- Streptococcus agalactiae 2603V/R (208435.1) | | | | | | | | `-------| Streptococci | | | | | | | |------- Streptococcus agalactiae A909 (205921.3) | | | | | | | |------- Streptococcus agalactiae NEM316 (211110.1) | | | | | | | |------- Streptococcus mitis NCTC 12261 (246201.1) | | | | | | | |------- Streptococcus mutans UA159 (210007.1) | | | | | | | |------- Streptococcus pneumoniae R6 (171101.1) | | | | | | | |------- Streptococcus pneumoniae TIGR4 (170187.1) | | | | | | | |------- Streptococcus pyogenes M1 GAS (160490.1) | | | | | | | |------- Streptococcus pyogenes MGAS10270 (370552.3) | | | | | | | |------- Streptococcus pyogenes MGAS10394 (286636.1) | | | | | | | |------- Streptococcus pyogenes MGAS10750 (370554.3) | | | | | | | |------- Streptococcus pyogenes MGAS2096 (370553.3) | | | | | | | |------- Streptococcus pyogenes MGAS315 (198466.1) | | | | | | | |------- Streptococcus pyogenes MGAS5005 (293653.3) | | | | | | | |------- Streptococcus pyogenes MGAS6180 (319701.3) | | | | | | | |------- Streptococcus pyogenes MGAS8232 (186103.1) | | | | | | | |------- Streptococcus pyogenes MGAS9429 (370551.3) | | | | | | | |------- Streptococcus pyogenes SSI-1 (193567.1) | | | | | | | |------- Streptococcus pyogenes M5 (1314.1) | | | | | | | |------- Streptococcus thermophilus CNRZ1066 (299768.3) | | | | | | | `------- Streptococcus thermophilus LMG 18311 (264199.3) | | | | | | | | | | | | ,------- Onion yellows phytoplasma OY-M (262768.1) | | | | | | `-------| Mollicutes | | | | | | ,------- Mesoplasma florum L1 (265311.3) | | |-------| | | | `------- Spiroplasma kunkelii CR2-3x (273035.1) | | | | | | | | | ,------- Mycoplasma gallisepticum R (233150.3) | | | | | | | ,-------| Mycoplasma | | | | | | | | | |------- Mycoplasma genitalium G-37 (243273.1) | | | | | | | | | |------- Mycoplasma hyopneumoniae 232 (295358.3) | | | | | | | | | |------- Mycoplasma hyopneumoniae 7448 (262722.3) | | | | | | | | | |------- Mycoplasma hyopneumoniae J (262719.3) | | | | | | | | | |------- Mycoplasma mobile 163K (267748.1) | | | | | | | | | |------- Mycoplasma mycoides subsp. mycoides SC str. PG1 (272632.1) | | | | | | | | | |------- Mycoplasma penetrans HF-2 (272633.1) | | | | | | | | | |------- Mycoplasma pneumoniae M129 (272634.1) | | | | | | | | | |------- Mycoplasma pulmonis UAB CTIP (272635.1) | | | | | | | | | `------- Mycoplasma synoviae 53 (262723.3) | | | | | | | | | | `-------| Mycoplasmataceae | | | | | `------- Ureaplasma parvum serovar 3 ATCC 700970 (273119.1) | | | | | |------- Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (190304.1) | | | | | | ,------- Blastopirellula marina DSM 3645 (314230.3) | |-------| | | `------- Pirellula sp. 1 (243090.1) | | | | | | ,------- Caulobacter crescentus CB15 (190650.1) | | | | | ,-------| Alphaproteobacteria | | | | | | | |------- Parvularcula bermudensis HTCC2503 (314260.3) | | | | | | | | | | | | ,------- Bartonella henselae str. Houston-1 (283166.1) | | | | ,-------| | | | | | `------- Bartonella quintana str. Toulouse (283165.1) | | | | | | | | | | | | | |-------| Rhizobiales | | | | | | | | | | | | | | | ,------- Bradyrhizobium japonicum USDA 110 (224911.1) | | | | |-------| | | | | | |------- Nitrobacter sp. Nb-311A (314253.3) | | | | | | | | | | | |------- Nitrobacter winogradskyi Nb-255 (323098.3) | | | | | | | | | | | `------- Rhodopseudomonas palustris CGA009 (258594.1) | | | | | | | | | | | | | | | ,------- Brucella abortus biovar 1 str. 9-941 (262698.3) | | | | |-------| | | | | | |------- Brucella melitensis 16M (224914.1) | | | | | | | | | | | |------- Brucella abortus (235.1) | | | | | | | | | | | `------- Brucella suis 1330 (204722.1) | | | | | | | | | | | | | | | ,------- Mesorhizobium loti MAFF303099 (266835.1) | | | | |-------| | | | | | `------- Mesorhizobium sp. BNC1 (266779.1) | | | | | | | | | | | | | | | ,------- Agrobacterium tumefaciens str. C58 (176299.3) | | | | | ,-------| | | | | | | `------- Agrobacterium tumefaciens str. C58 (176299.4) | | | | |-------| | | | | | |------- Rhizobium leguminosarum bv. viciae 3841 (216596.1) | | | | | | | | | | | `------- Sinorhizobium meliloti 1021 (266834.1) | | | | | | | | | | | | | | `------- Aurantimonas sp. SI85-9A1 (314269.3) | | | | | | | | | | | | | | | | ,------- Oceanicaulis alexandrii HTCC2633 (314254.3) | | | | | | | | |-------| Rhodobacterales | | | | | | | | | | ,------- Loktanella vestfoldensis SKA53 (314232.3) | | | | | | | | | | |-------| Rhodobacteraceae | | | | | | | | | | | | | | | | | |------- Oceanicola batsensis HTCC2597 (252305.3) | | | | | | | | | | | |------- Rhodobacter sphaeroides 2.4.1 (272943.3) | | | | | | | | | | | |------- Roseobacter sp. MED193 (314262.3) | | | | | | | | | | | | ,------- Roseovarius nubinhibens ISM (89187.3) | | | | | |-------| | | | | | | `------- Roseovarius sp. 217 (314264.3) | | | | | | | | | | | | ,------- Silicibacter pomeroyi DSS-3 (246200.3) | | | | | |-------| | | | | | | `------- Silicibacter sp. TM1040 (292414.1) | | | | | | | | | | | | | | | | | | ,------- Sulfitobacter sp. EE-36 (52598.3) | | | | | `-------| | | | | | `------- Sulfitobacter sp. NAS-14.1 (314267.3) | | | | | | | | | `------- Rhodobacterales bacterium HTCC2654 (314271.3) | | | | | | | | | | | | | | | | ,------- Gluconobacter oxydans 621H (290633.1) | | | |-------| | | | | `------- Rhodospirillum rubrum (1085.1) | | | | | | | | | | | | ,------- Anaplasma marginale str. St. Maries (234826.3) | | | | ,-------| | | | | | | | | | | | | ,------- Ehrlichia canis str. Jake (269484.4) | | | | | `-------| | | | | | |------- Ehrlichia ruminantium str. Gardel (302409.3) | | | | | | | | | | | `------- Ehrlichia ruminantium str. Welgevonden (254945.3) | | | | | | | | | | | | | |-------| Rickettsiales | | | | | | | | | | ,------- Rickettsia conorii str. Malish 7 (272944.1) | | | | | ,-------| | | | | | | |------- Rickettsia felis URRWXCal2 (315456.3) | | | | | | | | | | | | | |------- Rickettsia rickettsii (783.1) | | | | | | | | | | | | | `------- Rickettsia sibirica (35793.1) | | | | | ,-------| | | | | | | | | | | | | | | ,------- Rickettsia prowazekii str. Madrid E (272947.1) | | | | | | `-------| | | | | | | `------- Rickettsia typhi str. Wilmington (257363.1) | | | | | | | | | | | | | | | | |-------| Rickettsiaceae | | | | | | | | | | | | | | | | | | ,------- Wolbachia sp. endosymbiont of Drosophila melanogaster (163164.1) | | | | | `-------| | | | | | |------- Wolbachia endosymbiont strain TRS of Brugia malayi (292805.3) | | | | | | | | | | | | | | | | | | ,------- Wolbachia pipientis quinquefasciatus (955.1) | | | | | `-------| | | | | | `------- Wolbachia pipientis wMel (955.2) | | | | | | | | | | | | | | `------- Candidatus Pelagibacter ubique HTCC1062 (335992.3) | | | | | | | | | | | | ,------- Erythrobacter sp. NAP1 (237727.3) | | | | ,-------| | | | | | `------- Erythrobacter litoralis HTCC2594 (314225.3) | | | `-------| | | | | | | | | ,------- Novosphingobium aromaticivorans (48935.1) | | | `-------| | | | `------- Zymomonas mobilis subsp. mobilis ZM4 (264203.3) | | | | | | | |-------| Proteobacteria | | | | | | | | | ,------- Bordetella avium (521.1) | | | ,-------| | | | | |------- Bordetella bronchiseptica RB50 (257310.1) | | | | | | | | | |------- Bordetella parapertussis 12822 (257311.1) | | | | | | | | | `------- Bordetella pertussis Tohama I (257313.1) | | | | | | | | | | | ,-------| Burkholderiales | | | | | | | | | | ,------- Burkholderia cenocepacia J2315 (216591.1) | | | | | ,-------| | | | | | | |------- Burkholderia cepacia R18194 (269483.3) | | | | | | | | | | | | | |------- Burkholderia vietnamiensis str. G4 (R1808) (60552.1) | | | | | | | | | | | | | `------- Burkholderia cepacia R1808 (269482.1) | | | | | ,-------| | | | | | | | | | | | | | |------- Burkholderia fungorum (134537.1) | | | | | | | | | | | | | |------- Burkholderia mallei ATCC 23344 (243160.4) | | | | | | | | | | | | | |------- Burkholderia xenovorans LB400 (36873.1) | | | | | | | | | | | | | | ,------- Burkholderia pseudomallei 1710b (320372.3) | | | | | | `-------| | | | | | | `------- Burkholderia pseudomallei K96243 (272560.3) | | | | | | | | | | |-------| Burkholderiaceae | | | | | | | | | | | | | | | | | |------- Ralstonia eutropha JMP134 (264198.3) | | | | | | | | | | | `------- Ralstonia solanacearum GMI1000 (267608.1) | | | | | | | | | | | | | | `------- Polaromonas sp. JS666 (296591.1) | | | | | | | | | | |-------| Betaproteobacteria | | | | | | | | | | | |------- Thiobacillus denitrificans ATCC 25259 (292415.3) | | | | | | | |------- Methylobacillus flagellatus KT (265072.1) | | | | | | | | | | | | ,------- Chromobacterium violaceum ATCC 12472 (243365.1) | | | |-------| | | | | | ,------- Neisseria gonorrhoeae FA 1090 (242231.4) | | | | `-------| | | | | |------- Neisseria lactamica ST-640 (486.1) | | | | | | | | | |------- Neisseria meningitidis FAM18 (487.2) | | | | | | | | | |------- Neisseria meningitidis MC58 (122586.1) | | | | | | | | | `------- Neisseria meningitidis Z2491 (122587.1) | | | | | | | | | | | |------- Nitrosomonas europaea ATCC 19718 (228410.1) | | | | | | | | | | | | ,------- Azoarcus sp. EbN1 (76114.4) | | | `-------| | | | `------- Dechloromonas aromatica RCB (159087.4) | | | | | | | | | ,------- Bacteriovorax marinus SJ (97084.1) | | | ,-------| | | | | `------- Bdellovibrio bacteriovorus HD100 (264462.1) | | |-------| | | | | | | | |------- Desulfotalea psychrophila LSv54 (177439.1) | | | | | | | | | | | | ,------- Desulfovibrio desulfuricans G20 (207559.3) | | | |-------| | | | | `------- Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough (882.1) | | | | | | | | | | | | ,------- Desulfuromonas acetoxidans (891.1) | | | `-------| | | | | ,------- Geobacter metallireducens GS-15 (269799.3) | | | `-------| | | | `------- Geobacter sulfurreducens PCA (243231.1) | | | | | | | | | ,------- Campylobacter fetus subsp. fetus 82-40 (360106.3) | | | | | | | ,-------| Campylobacteraceae | | | | | | | | | |------- Campylobacter coli RM2228 (306254.1) | | | | | | | | | |------- Campylobacter jejuni RM1221 (195099.3) | | | | | | | | | |------- Campylobacter jejuni subsp. jejuni 260.94 (360108.3) | | | | | | | | | |------- Campylobacter jejuni subsp. jejuni 81-176 (354242.3) | | | | | | | | | |------- Campylobacter jejuni subsp. jejuni 84-25 (360110.3) | | | | | | | | | |------- Campylobacter jejuni subsp. jejuni CF93-6 (360111.3) | | | | | | | | | |------- Campylobacter jejuni subsp. jejuni HB93-13 (360112.3) | | | | | | | | | |------- Campylobacter jejuni subsp. jejuni NCTC 11168 (192222.1) | | | | | | | | | |------- Campylobacter lari RM2100 (306263.1) | | | | | | | | | `------- Campylobacter upsaliensis RM3195 (306264.1) | | | | | | | | | | |-------| Epsilonproteobacteria | | | | | | | | ,------- Helicobacter hepaticus ATCC 51449 (235279.1) | | | | ,-------| | | | | | |------- Helicobacter mustelae 43772 (217.1) | | | | | | | | | | | |------- Helicobacter pylori 26695 (85962.1) | | | | | | | | | | | `------- Helicobacter pylori J99 (85963.1) | | | `-------| | | | | | | | |------- Thiomicrospira denitrificans ATCC 33889 (326298.3) | | | | | | | `------- Wolinella succinogenes DSM 1740 (273121.1) | | | | | | | | | ,------- Alteromonas macleodii 'Deep ecotype' (314275.3) | | | ,-------| | | | | `------- Microbulbifer degradans 2-40 (203122.1) | | | | | | | | | | | ,-------| Alteromonadales | | | | | | | | | |------- Colwellia psychrerythraea 34H (167879.3) | | | | | | | | | | | | | | | ,------- Idiomarina baltica OS145 (314276.3) | | | | |-------| | | | | | `------- Idiomarina loihiensis L2TR (283942.3) | | | | | | | | | | | | | | | ,------- Pseudoalteromonas haloplanktis TAC125 (326442.4) | | | | |-------| | | | | | `------- Pseudoalteromonas tunicata D2 (87626.3) | | | | | | | | | | | | | | |------- Psychromonas sp. CNPT3 (314282.3) | | | | | | | | | | | | | | | ,------- Shewanella amazonensis SB2B (326297.3) | | | | `-------| | | | | |------- Shewanella baltica OS155 (325240.3) | | | | | | | | | |------- Shewanella denitrificans OS-217 (318161.3) | | | | | | | | | |------- Shewanella frigidimarina NCIMB 400 (318167.3) | | | | | | | | | |------- Shewanella oneidensis MR-1 (211586.1) | | | | | | | | | |------- Shewanella putrefaciens CN-32 (319224.3) | | | | | | | | | `------- Shewanella sp. PV-4 (323850.3) | | | | | | |-------| Gammaproteobacteria | | | | | | | | | | | | ,------- Nitrosococcus oceani ATCC 19707 (323261.3) | | | |-------| | | | | `------- Nitrococcus mobilis Nb-231 (314278.3) | | | | | | | | | | | | ,------- Buchnera aphidicola str. APS (Acyrthosiphon pisum) (107806.1) | | | | ,-------| | | | | | |------- Buchnera aphidicola str. Bp (Baizongia pistaciae) (224915.1) | | | | | | | | | | | `------- Buchnera aphidicola str. Sg (Schizaphis graminum) (198804.1) | | | | | | | | | | | | | |-------| Enterobacteriales | | | | | | | | | | ,------- Escherichia coli 042 (216592.1) | | | | |-------| | | | | | |------- Escherichia coli CFT073 (199310.1) | | | | | | | | | | | |------- Escherichia coli E2348/69 (216593.1) | | | | | | | | | | | |------- Escherichia coli K12 (83333.1) | | | | | | | | | | | |------- Escherichia coli O157:H7 (83334.1) | | | | | | | | | | | |------- Escherichia coli O157:H7 EDL933 (155864.1) | | | | | | | | | | | `------- Escherichia coli W3110 (316407.3) | | | | | | | | | | | | | | |------- Erwinia carotovora subsp. atroseptica SCRI1043 (218491.3) | | | | | | | | | | | | | | | ,------- Photorhabdus asymbiotica subsp. asymbiotica (171440.1) | | | | |-------| | | | | | `------- Photorhabdus luminescens subsp. laumondii TTO1 (243265.1) | | | | | | | | | | | | | | |------- Proteus mirabilis HI4320 (584.1) | | | | | | | | | | | | | | | ,------- Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 (321314.4) | | | | |-------| | | | | | |------- Salmonella enterica subsp. enterica serovar Gallinarum (594.1) | | | | | | | | | | | |------- Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150 (295319.3) | | | | | | | | | | | | ,------- Salmonella enterica subsp. enterica serovar Typhi Ty2 (209261.1) | | | | | |-------| | | | | | | `------- Salmonella enterica subsp. enterica serovar Typhi str. CT18 (220341.1) | | | | | | | | | | | `------- Salmonella typhimurium LT2 (99287.1) | | | | | | | | | | | | | | |------- Serratia marcescens Db11 (615.1) | | | | | | | | | | | | | | | ,------- Shigella dysenteriae M131649 (216598.1) | | | | |-------| | | | | | |------- Shigella flexneri 2a str. 2457T (198215.1) | | | | | | | | | | | |------- Shigella flexneri 2a str. 301 (198214.1) | | | | | | | | | | | |------- Shigella sonnei 53G (216599.1) | | | | | | | | | | | `------- Shigella sonnei Ss046 (300269.3) | | | | | | | | | | | | | | |------- Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis (36870.1) | | | | | | | | | | | | | | | ,------- Yersinia enterocolitica 8081 (630.2) | | | | |-------| | | | | | |------- Yersinia pestis CO92 (214092.1) | | | | | | | | | | | |------- Yersinia pestis KIM (187410.1) | | | | | | | | | | | |------- Yersinia pestis biovar Medievalis str. 91001 (229193.1) | | | | | | | | | | | `------- Yersinia pseudotuberculosis IP 32953 (273123.1) | | | | | | | | | | | | | | | ,------- Candidatus Blochmannia floridanus (203907.1) | | | | `-------| | | | | `------- Candidatus Blochmannia pennsylvanicus str. BPEN (291272.3) | | | | | | | | | | | | ,------- Coxiella burnetii RSA 493 (227377.1) | | | |-------| | | | | | ,------- Legionella pneumophila str. Lens (297245.3) | | | | `-------| | | | | |------- Legionella pneumophila str. Paris (297246.3) | | | | | | | | | `------- Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (272624.3) | | | | | | | | | | | |------- Methylococcus capsulatus str. Bath (243233.4) | | | | | | | | | | | | ,------- Actinobacillus pleuropneumoniae serovar 1 str. 4074 (228399.1) | | | | | | | | |-------| Pasteurellales | | | | | | | | | | ,------- Haemophilus ducreyi 35000HP (233412.1) | | | | |-------| | | | | | |------- Haemophilus influenzae 86-028NP (281310.3) | | | | | | | | | | | |------- Haemophilus influenzae R2846 (262727.1) | | | | | | | | | | | |------- Haemophilus influenzae R2866 (262728.1) | | | | | | | | | | | `------- Haemophilus influenzae Rd KW20 (71421.1) | | | | | | | | | | | | | | | ,------- Haemophilus somnus 129PT (205914.1) | | | | |-------| | | | | | `------- Haemophilus somnus 2336 (228400.1) | | | | | | | | | | | | | | |------- Mannheimia succiniciproducens MBEL55E (221988.1) | | | | | | | | | `------- Pasteurella multocida subsp. multocida str. Pm70 (272843.1) | | | | | | | | | | | | ,------- Acinetobacter sp. ADP1 (62977.3) | | | | ,-------| | | | | | | | | | | | | ,------- Psychrobacter sp. 273-4 (259536.3) | | | | | `-------| | | | | | `------- Psychrobacter sp. 273-4 (259536.4) | | | | | | | | |-------| Pseudomonadales | | | | | | | | | | | | | | | ,------- Azotobacter vinelandii (354.1) | | | | | | | | | | `-------| Pseudomonadaceae | | | | | | | | | | | | | | | ,------- Pseudomonas aeruginosa PAO1 (208964.1) | | | | `-------| | | | | |------- Pseudomonas aeruginosa UCBPP-PA14 (208963.1) | | | | | | | | | |------- Pseudomonas fluorescens Pf-5 (220664.3) | | | | | | | | | |------- Pseudomonas fluorescens PfO-1 (205922.3) | | | | | | | | | |------- Pseudomonas fluorescens SBW25 (216595.1) | | | | | | | | | |------- Pseudomonas putida KT2440 (160488.1) | | | | | | | | | |------- Pseudomonas syringae pv. phaseolicola 1448A (264730.3) | | | | | | | | | |------- Pseudomonas syringae pv. syringae B728a (205918.4) | | | | | | | | | `------- Pseudomonas syringae pv. tomato str. DC3000 (223283.1) | | | | | | | | | | | | ,------- Francisella tularensis subsp. tularensis Schu 4 (177416.3) | | | |-------| | | | | `------- Thiomicrospira crunogena XCL-2 (317025.3) | | | | | | | | | | | | ,------- Photobacterium profundum SS9 (298386.1) | | | | ,-------| | | | | | `------- Photobacterium profundum 3TCK (314280.3) | | | | | | | | | | | | | |-------| Vibrionales | | | | | | | | | | ,------- Vibrio sp. MED222 (314290.3) | | | | | | | | | | | |------- Vibrio splendidus 12B01 (314291.3) | | | | | | | | | | | |------- Vibrio cholerae O1 biovar eltor str. N16961 (243277.1) | | | | `-------| | | | | |------- Vibrio cholerae MO10 (345072.3) | | | | | | | | | |------- Vibrio cholerae O395 (345073.3) | | | | | | | | | |------- Vibrio fischeri ES114 (312309.3) | | | | | | | | | |------- Vibrio parahaemolyticus RIMD 2210633 (223926.1) | | | | | | | | | |------- Vibrio sp. Ex25 (150340.3) | | | | | | | | | |------- Vibrio vulnificus CMCP6 (216895.1) | | | | | | | | | `------- Vibrio vulnificus YJ016 (196600.1) | | | | | | | | | | | | ,------- Stenotrophomonas maltophilia K279a (40324.1) | | | |-------| | | | | | | | | | | ,------- Xanthomonas axonopodis pv. citri str. 306 (190486.1) | | | | |-------| | | | | | |------- Xanthomonas campestris pv. campestris str. 8004 (314565.3) | | | | | | | | | | | |------- Xanthomonas campestris pv. campestris ATCC 33913 (190485.1) | | | | | | | | | | | |------- Xanthomonas campestris pv. vesicatoria str. 85-10 (316273.3) | | | | | | | | | | | `------- Xanthomonas oryzae pv. oryzae KACC10331 (291331.3) | | | | | | | | | | | | | | | ,------- Xylella fastidiosa 9a5c (160492.1) | | | | `-------| | | | | |------- Xylella fastidiosa Ann-1 (155920.1) | | | | | | | | | `------- Xylella fastidiosa Temecula1 (183190.1) | | | | | | | | | | | | ,------- Reinekea sp. MED297 (314283.3) | | | `-------| | | | `------- gamma proteobacterium KT 71 (314285.3) | | | | | | | | `------- Magnetococcus sp. MC-1 (156889.1) | | | | ,------- Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (267671.1) | | ,-------| | | | `------- Leptospira interrogans serovar Lai str. 56601 (189518.1) | | | | |-------| | | | ,------- Borrelia burgdorferi B31 (224326.1) | | | ,-------| | | | | `------- Borrelia garinii PBi (290434.1) | | `-------| | | | | | | ,------- Treponema denticola ATCC 35405 (243275.1) | | `-------| | | `------- Treponema pallidum subsp. pallidum str. Nichols (243276.1) | | | | | `------- Thermotoga maritima MSB8 (243274.1) | | | ,------- Plasmodium falciparum 3D7 (36329.1) | ,-------| | | `------- Paramecium tetraurelia (5888.3) | | | | `-------| Eukaryota | | |------- Guillardia theta (55529.1) | | |------- Trypanosoma brucei (5691.1) | | | ,------- Gibberella zeae PH-1 (229533.1) | ,-------| | | |------- Magnaporthe grisea 70-15 (242507.1) | | | | | `------- Neurospora crassa (5141.1) | ,-------| | | | | | | ,------- Eremothecium gossypii (33169.1) | | |-------| | | | `------- Saccharomyces cerevisiae (baker's yeast) (4932.3) | | | | | | | | `------- Schizosaccharomyces pombe (4896.1) |-------| | | | `------- Encephalitozoon cuniculi (6035.1) | | | ,------- Drosophila melanogaster (Fruit fly) (7227.3) | ,-------| | | | ,------- Anopheles gambiae (African malaria mosquito) (7165.3) | | `-------| | | `------- Anopheles gambiae str. PEST (180454.1) | ,-------| | | | | | `------- Apis mellifera (honeybee) (7460.5) | | |-------| Metazoa | | | | ,------- Fugu rubripes (Fugu) (31033.3) | | ,-------| | | | `------- Tetraodon nigroviridis (Green puffer) (99883.3) | | ,-------| | | | `------- Danio rerio (zebrafish) (7955.3) | | | | | | | | ,-------| Craniata | | | | | | | | | | | |------- Xenopus tropicalis (western clawed frog) (8364.3) | | | | | | | | | | | |------- Gallus gallus (Chicken) (9031.3) | | | | | | | | | | | | ,------- Mus musculus (House mouse) (10090.3) | | | | ,-------| | | | | | `------- Rattus norvegicus (Norway rat) (10116.3) | | | | ,-------| | | | | | | | | | | | | ,------- Homo sapiens (Human) (9606.3) | | | | | `-------| | | | | | `------- Pan troglodytes (Chimpanzee) (9598.2) | | | `-------| | | | | | | | `------- Canis familiaris (dog) (9615.3) | | | | | | | |-------| Chordata | | | | | | | | `------- Ciona intestinalis (sea_squirt) (7719.3) | | | | | `------- Caenorhabditis elegans (C.elegans) (6239.3) | | | ,------- Oryza sativa (japonica cultivar-group) (39947.1) `-------| `------- Arabidopsis thaliana (3702.1)
