NMPDR Wiki

The Official Documentation Site for the National Microbial Pathogen Data Resource

Evidence codes

From NMPDR Wiki

Evidence codes are used in the NMPDR to indicate why a particular functional role has been assigned to a gene. The evidence codes currently in use are shown below.


Code Name Explanation
IDA Inferred from Direct Assay
IGI Inferred from Genetic Interaction
TAS Traceable Author Statement
ISU In Subsystem Unique The gene is the only one in the genome connected to the assigned functional role in the relevant subsystem.
IDU(n) In Subsystem Duplicated The gene is one of n genes from the genome connected to the assigned functional role in the relevant subsystem.
ICW(n) In Cluster With The gene is in a chromosomal cluster containing n other genes connected to the relevant subsystem.
FF FIG Family The gene is in a FIGfam with other genes having the functional role.
CWN Clustered With Nonhypothetical
CWH Clustered With Hypotheticals
DLIT Direct Literature The gene is assigned to this functional role in the literature.
ILIT Indirect Literature Similar genes are assigned to this functional role in the literature.


Personal tools